1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACCATCAATGGCGACGACCTGCTGTGGGCCATGGCCACGCTGGGGTTTGAGGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGGTGCgtactgatgaaggtattggggacttcaggttaattggattgatttggtggtcaggttgtgcaatcaccaatctgtcaccttgtcgattgtacctctgatt...
species | Zea mays |
transcript | GRMZM2G064426_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGATGG AGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGGEST: gi|31664551|gb|CD573484.1|CD573484
genomic: GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGGTGCgtactgatga ... gattaacaacAGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGG
EST: GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGATGG AGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGGEST: gi|31664550|gb|CD573483.1|CD573483
genomic: GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGGTGCgtactgatga ... gattaacaacAGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGG
EST: GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGATGG AGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGGEST: gi|71311885|gb|DR792413.1|DR792413
genomic: GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGGTGCgtactgatga ... gattaacaacAGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGG
EST: GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGATGG AGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGGEST: gi|29543654|gb|CB604034.1|CB604034
genomic: GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGGTGCgtactgatga ... gattaacaacAGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGG
EST: GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGATGG AGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGGEST: gi|71446912|gb|DR827962.1|DR827962
genomic: GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGGTGCgtactgatga ... gattaacaacAGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGG
EST: GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGATGG AGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGGEST: gi|60397343|gb|DN230159.1|DN230159
genomic: GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGGTGCgtactgatga ... gattaacaacAGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGG
EST: GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGATGG AGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGGEST: gi|71311886|gb|DR792414.1|DR792414
genomic: GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGGTGCgtactgatga ... gattaacaacAGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGG
EST: GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGATGG AGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGGEST: gi|149102150|gb|EE287580.2|EE287580
genomic: GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGGTGCgtactgatga ... gattaacaacAGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGG
EST: GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGATGG AGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGGEST: gi|149102149|gb|EE188096.2|EE188096
genomic: GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGGTGCgtactgatga ... gattaacaacAGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGG
EST: GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGATGG AGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGGEST: gi|60344410|gb|DN211383.1|DN211383
genomic: GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGGTGCgtactgatga ... gattaacaacAGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGG
EST: GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGATGG AGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGGEST: gi|71315806|gb|DR794556.1|DR794556
genomic: GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGGTGCgtactgatga ... gattaacaacAGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGG
EST: GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGATGG AGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGGEST: gi|149107729|gb|EE189603.2|EE189603
genomic: GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGGTGCgtactgatga ... gattaacaacAGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGG
EST: GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGATGG AGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGGEST: gi|71315807|gb|DR794557.1|DR794557
genomic: GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGGTGCgtactgatga ... gattaacaacAGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGG
EST: GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGATGG AGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGGEST: gi|76930838|gb|DV172525.1|DV172525
genomic: GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGGTGCgtactgatga ... gattaacaacAGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGG
EST: GACTATATTTGAACCCCTCAAGGTGTATCTGCAGAAGTACAGAGAGATGG AGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGGEST: gi|26557696|gb|CA829931.1|CA829931
genomic: GACTATATT-GAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGGTGCgtactgatga ... gattaacaacAGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGG
EST: GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGATGG AGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGG
genomic: GGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGGTGCgtactgatga ... gattaacaacAGGGTGATAGTAAGTTAACTTCAAAATCCAGCGATGGCTCCATTAAAAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCATCAATGGCGACGACCTGCTGTGGGCCATGGCCACGCTGGGGTTTGAGGACTATATTGAACCCCTCAAGGTGTACCTGCAGAAGTACAGAGAGGTGCgtactgatgaaggtattggggacttcaggttaattggattgatttggtggtcaggttgtgcaatcaccaatctgtcaccttgtcgattgtacctctgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG