1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCAATCCCAGATGGTAGTTCTACTGCCACAAAGAAAAATGGAAGTTGGGGAGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagcaattgaacatcttcgttgtccacctttgttctttttagcaggaaaaaaatggcatatttcttttttatgaatgtcacacccggatttaag...
species | Zea mays |
transcript | GRMZM2G057251_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTACTTEST: gi|78082805|gb|DV511198.1|DV511198
genomic: GATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTT
EST: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGTEST: gi|74237329|gb|DT645243.1|DT645243
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGT
EST: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGTEST: gi|60400857|gb|DN233664.1|DN233664
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGT
EST: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGTEST: gi|71770367|gb|DR968304.1|DR968304
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGT
EST: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGTEST: gi|76936954|gb|DV174978.1|DV174978
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGT
EST: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTATTTTAAGGGGACAGAAGAATCTAATCAGTEST: gi|60338253|gb|DN205226.1|DN205226
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGT
EST: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTATTTTAAGGGGACAGAAGAATCTAATCAGTEST: gi|78076770|gb|DV505204.1|DV505204
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGT
EST: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGTEST: gi|76018601|gb|DT945771.1|DT945771
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGT
EST: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGTEST: gi|78074902|gb|DV503336.1|DV503336
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGT
EST: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTATTTTAAGGGGACAGAAGAATCTAATCAGTEST: gi|91869751|gb|EB400522.1|EB400522
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGT
EST: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGTEST: gi|78076771|gb|DV505205.1|DV505205
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGT
EST: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGTEST: gi|60397948|gb|DN230764.1|DN230764
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGT
EST: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGTEST: gi|149088922|gb|EE178063.2|EE178063
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGT
EST: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGTEST: gi|211444699|gb|FL108662.1|FL108662
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGT
EST: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGTEST: gi|60400044|gb|DN232851.1|DN232851
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGT
EST: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGTEST: gi|32809053|gb|CD961287.1|CD961287
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGT
EST: GATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTACEST: gi|74237328|gb|DT645242.1|DT645242
genomic: GATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTAC
EST: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGTEST: gi|211515339|gb|FL131682.1|FL131682
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGT
EST: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGGAACTTTGATGATGAGTATTTTAAGGGGACAGAAEST: gi|71299507|gb|DR785763.1|DR785763
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAA
EST: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGTEST: gi|32808361|gb|CD960595.1|CD960595
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGT
EST: GATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTACTTTAEST: gi|76018600|gb|DT945770.1|DT945770
genomic: GATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTA
EST: AGCCTCAGGATCTCGCACGGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGTEST: gi|211515335|gb|FL131678.1|FL131678
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGT
EST: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTATTTTAAGGGGACAGAAGAATCTAATCAGTEST: gi|78082804|gb|DV511197.1|DV511197
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGT
EST: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGTEST: gi|67038186|gb|CO464516.1|CO464516
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGT
EST: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGTEST: gi|32857817|gb|CD997498.1|CD997498
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGT
EST: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGTEST: gi|78086622|gb|DV515015.1|DV515015
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGT
EST: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGTEST: gi|74235878|gb|DT643792.1|DT643792
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGT
EST: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGTEST: gi|148932647|gb|EC876561.2|EC876561
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGT
EST: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGTEST: gi|211444700|gb|FL108663.1|FL108663
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGT
EST: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTACEST: gi|15313737|gb|BI478932.1|BI478932
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTAC
EST: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGTEST: gi|76281470|gb|DV021038.1|DV021038
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGT
EST: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGTEST: gi|149015005|gb|EE044748.2|EE044748
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGT
EST: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGTEST: gi|149070317|gb|EE158717.2|EE158717
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGT
EST: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTG ATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGT
genomic: AGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagc ... aaacatacagATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAATCCCAGATGGTAGTTCTACTGCCACAAAGAAAAATGGAAGTTGGGGAGCCTCAGGATCTCGCACTGGAGGAGCCATAAAGTTCGACTCTACTGCTGgttagtgagcaattgaacatcttcgttgtccacctttgttctttttagcaggaaaaaaatggcatatttcttttttatgaatgtcacacccggatttaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaat