1 5' 3' | 2 5' 3' | 3 5' 3' |
TGTTATATGCTGCTATGCAGGCATTATCGCGCTACTACTCCTTCCTTCACTTGCAAAAAACACATACCTCTCGGAGAATGCTCTTATACCTGgtattttaccctcctctctattttttgtttactgctactctattgatgcatacatgttgttgttcttgatgggtgtacctgtctggtggctgtacactca...
species | Zea mays |
transcript | GRMZM2G054470_T05 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCCTTCACTTGCAAAAAACACATACCTCTCGGAGAATGCTCTTATACCTG GCTCTGCAAATCCATTATTTTCTACTGAAGATGCCATTGAAGCAAACAGATEST: gi|78118750|gb|DV537134.1|DV537134
genomic: TCCTTCACTTGCAAAAAACACATACCTCTCGGAGAATGCTCTTATACCTGgtattttacc ... ttgtatgtagGCTCTGCAAATCCATTATTTTCTACTGAAGATGCCATTGAAGCAAACAGAT
EST: TCCTTCACTTGCAAAAAACACATACCTCTCGGAGAATGCTCTTATACCTG GCTCTGCAAATCCATTATTTTCTACTGAAGATGCCATTGAAGCAAACAGATEST: gi|211170225|gb|FL438775.1|FL438775
genomic: TCCTTCACTTGCAAAAAACACATACCTCTCGGAGAATGCTCTTATACCTGgtattttacc ... ttgtatgtagGCTCTGCAAATCCATTATTTTCTACTGAAGATGCCATTGAAGCAAACAGAT
EST: TCCTTCACTTGCAAAAAACACATACCTCTCGGAGAATGCTCTTATACCTG GCTCTGCAAATCCATTATTTTCTACTGAAGATGCCATTGAAGCAAACAGATEST: gi|93016995|gb|EB642515.1|EB642515
genomic: TCCTTCACTTGCAAAAAACACATACCTCTCGGAGAATGCTCTTATACCTGgtattttacc ... ttgtatgtagGCTCTGCAAATCCATTATTTTCTACTGAAGATGCCATTGAAGCAAACAGAT
EST: TCCTTCACTTGCAAAAAACACATACCTCTCGGAGAATGCTCTTATACCTG GCTCTGCAAATCCATTATTTTCTACTGAAGATGCCATTGAAGCAAACAGATEST: gi|211073736|gb|FL043533.1|FL043533
genomic: TCCTTCACTTGCAAAAAACACATACCTCTCGGAGAATGCTCTTATACCTGgtattttacc ... ttgtatgtagGCTCTGCAAATCCATTATTTTCTACTGAAGATGCCATTGAAGCAAACAGAT
EST: CCTTCACTTGCAAAAAACACATACCTCTCGGAGAATGCTCTTATACCTTG GCTCTGCAAATTCCATTATTTTCTACTGAAGATGCCATTGAAGCAAACAGEST: gi|211073735|gb|FL043532.1|FL043532
genomic: CCTTCACTTGCAAAAAACACATACCTCTCGGAGAATGCTCTTATACCT-Ggtattttacc ... ttgtatgtagGCTCTGCAAAT-CCATTATTTTCTACTGAAGATGCCATTGAAGCAAACAG
EST: TCCTTCACTTGCAAAAAACACATACCTCTCGGAGAATGCTCTTATACCTG GCTCTGCAAATCCATTATTTTCTACTGAAGATGCCATTGAAGCAAACAGAT
genomic: TCCTTCACTTGCAAAAAACACATACCTCTCGGAGAATGCTCTTATACCTGgtattttacc ... ttgtatgtagGCTCTGCAAATCCATTATTTTCTACTGAAGATGCCATTGAAGCAAACAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTATATGCTGCTATGCAGGCATTATCGCGCTACTACTCCTTCCTTCACTTGCAAAAAACACATACCTCTCGGAGAATGCTCTTATACCTGgtattttaccctcctctctattttttgtttactgctactctattgatgcatacatgttgttgttcttgatgggtgtacctgtctggtggctgtacactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA