Sequence
atgc intronic sequence ATGC exonic sequenceAAAATGGCAACTTGGAGCAGTGGCTGCACGGCGACGTCGGACCGGTCAGCCCTCTGACCTGGGAAATACGGATGAAGATCGCCGTCGGAACGGCCAAAGGgtatgctcatgctctgctgacagtttactgacagggtacttcataatcttcggttgttagtaatctgtgtgtgcatagcgaaataaatcgactgctaatgttgcccatgtatgtaccactgaatcgaatcggatctatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G043470_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g12680.2 (Oryza sativa), 5'ss of exon 3
AAAATGGCAACTTGGAGCAGTGGCTGCACGGCGACGTCGGACCGGTCAGCCCTCTGACCTGGGAAATACGGATGAAGATCGCCGTCGGAACGGCCAAAGGgtatgctcatgctctgctgacagtttactgacagggtacttcataatcttcggttgttagtaatctgtgtgtgcatagcgaaataaatcgactgctaatgttgcccatgtatgtaccactgaatcgaatcggatctatgcag
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AGAACGGCAACCTGGAGCAGTGGCTGCACGGCGACGTTGGCCCGGTCAGCCCGCTGACATGGGACATTCGGATGAAGATCGCCGTCGGAACGGCCAAAGGgtg-----atgaccgg-tgtcgatttgcc--ctgaat-ttccat--ctctcgctcttccgta-tcggcaggtgactgatctgacattgtggatgctgatattgtccattgcag-----------------------------
upper sequence: GRMZM2G043470_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv03s0063g02510.t01 (Vitis vinifera), 5'ss of exon 3
AAAATGGCAACTTGGAGCAGTGGCTGCACGGCGACGTCGGACCGGTCAGCCCTCTGACCTGGGAAATACGGATGAAGATCGCCGTCGGAACGGCCAAAGGgtatgctcatgctctgctgacagtttactgacagggtacttcataa---tcttcggttgttagtaatctgtgtgtgcatagcgaaataaatcgactgctaatgttgcccatgtatgtaccactgaatcgaatcggatctatgcag
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ACAATGGCAATTTGGAGCAGTGGTTGCATGGTGATGTAGGGCCTGTCAGTCCTCTAACATGGGATATTCGGATGAAGATTGCTGTTGGAACTGCAAAAGGgtgtg---atattctgccatc--tttatatacattttatttcttaggtgcctttgtttgtc--tcagctgtgcatgtctttttcctttcgtttgcttctcg-attacc-------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76926181|gb|DV170751.1|DV170751EST: CCTCTGACCTGGGAAATACGGATGAAGATCGCCGTCGGAACGGCCAAAGG CATAGCGTACCTGCACGAAGGCCTGGAGCCGAAGGTGGTGCACCGCGACAT
genomic: CCTCTGACCTGGGAAATACGGATGAAGATCGCCGTCGGAACGGCCAAAGGgtatgctcat ... atctatgcagCATAGCGTACCTGCACGAAGGCCTGGAGCCGAAGGTGGTGCACCGCGACAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAAATGGCAACTTGGAGCAGTGGCTGCACGGCGACGTCGGACCGGTCAGCCCTCTGACCTGGGAAATACGGATGAAGATCGCCGTCGGAACGGCCAAAGGgtatgctcatgctctgctgacagtttactgacagggtacttcataatcttcggttgttagtaatctgtgtgtgcatagcgaaataaatcgactgctaatgttgcccatgtatgtaccactgaatcgaatcggatctatgcag
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