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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGTTCACTGCACCAAAGATTGGCTGGGCTATACTGCCTTTACTGTCTGTATGAGTGCCAGCCATACAAGCCGCAGTTCAAGATTTACTTGTCTCTTGgtaaggcacatatttgagccaatatctggtgcatgctggaactgttctttaacacattaaatattttctccttttggaaacag

Basic information

species Zea mays
transcript GRMZM2G017584_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017584_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os10g35130.1 (Oryza sativa), 5'ss of exon 4
CAAAGTTCACTGCACCAAAGATTGGCTGGGCTATACTGCCTTTACTGTCTGTATGAGTGCCAGCCATACAAGCCGCAGTTCAAGATTTACTTGTCTCTTGgtaaggcacata-tttgagccaata-tctggtgcatgctggaactgttctttaacacattaaatattttctc--cttttggaaacag--------------
|| ||||   |||  |||||||||||||| || ||||||||||||||||| || || |  || ||||||||||| || |||||||| || |||||||||||||| |||| |  |||  | || || | |||||| | |||  |    |    ||      |    ||    |   ||   |||| ||              
CAGAGTTGTATGCCTCAAAGATTGGCTGGACTTTACTGCCTTTACTGTCTTTACGAATCGCAACCATACAAGCCACATTTCAAGATCTATTTGTCTCTTGgtaatgcacttgctttcggtcactaatttggtgctt-ctgatatcactagccaaatgcccatgcgttgcaacggattactgaaatagtaaaaattaaatcc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50333060|gb|CO528186.1|CO528186
EST:     GTATGAGTGCCAGCCATACAAGCCGCAGTTCAAGATTTACTTGTCTCTTG                         AGGAGTGCAGGCAACTGAAGGATATCGTTGTTATGGCGAAGCAAAATGGAC
genomic: GTATGAGTGCCAGCCATACAAGCCGCAGTTCAAGATTTACTTGTCTCTTGgtaaggcaca ... ttggaaacagAGGAGTGCAGGCAACTGAAGGATATCGTTGTTATGGCGAAGCAAAATGGAC