1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCCTGCCCCATTTGCTCCCAAAGGGTTACAAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTCAAGgttcacctctctaccctcctacctttctctgcaataacattcttgataaaatttgcaagccttctgacgccctgtttttatttcctacttacag
species | Zea mays |
transcript | GRMZM2G014066_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTCAAG AACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGCAATTTCTEST: gi|71305275|gb|DR788771.1|DR788771
genomic: CAAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTCAAGgttcacctct ... ctacttacagAACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGCAATTTCT
EST: CAAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTCAAG AACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGCAATTTCTEST: gi|71422365|gb|DR805702.1|DR805702
genomic: CAAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTCAAGgttcacctct ... ctacttacagAACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGCAATTTCT
EST: CAAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTCAAG AACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGCAATTTCTEST: gi|78074874|gb|DV503308.1|DV503308
genomic: CAAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTCAAGgttcacctct ... ctacttacagAACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGCAATTTCT
EST: CATGCAGCATGGTTACCTGTTCAAG AACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGCAATTTCTEST: gi|149086120|gb|EE175660.2|EE175660
genomic: CATGCAGCATGGTTACCTGTTCAAGgttcacctct ... ctacttacagAACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGCAATTTCT
EST: CAAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTCAAG AACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGCAATTTCTEST: gi|94472198|gb|EB701156.1|EB701156
genomic: CAAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTCAAGgttcacctct ... ctacttacagAACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGCAATTTCT
EST: CAAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTCAAG AACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGCAATTTCTEST: gi|148958296|gb|EC904516.2|EC904516
genomic: CAAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTCAAGgttcacctct ... ctacttacagAACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGCAATTTCT
EST: CAAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTCAAG AACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGCAATTTCTEST: gi|148990777|gb|EE032191.2|EE032191
genomic: CAAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTCAAGgttcacctct ... ctacttacagAACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGCAATTTCT
EST: CAAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTCAAG AACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGCAATTTCTEST: gi|32792051|gb|CD944287.1|CD944287
genomic: CAAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTCAAGgttcacctct ... ctacttacagAACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGCAATTTCT
EST: TAACCATATGACCGTGCAGCATGGTTACCTGTTCAAG AACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGCAATTTCTEST: gi|18654784|gb|BM499589.1|BM499589
genomic: TAACCATATGACCATGCAGCATGGTTACCTGTTCAAGgttcacctct ... ctacttacagAACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGCAATTTCT
EST: CAAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTCAAG AACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGCAATTTCTEST: gi|71427572|gb|DR808622.1|DR808622
genomic: CAAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTCAAGgttcacctct ... ctacttacagAACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGCAATTTCT
EST: CAAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTCAAG AACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGCAATTTCTEST: gi|20300095|gb|BQ163038.1|BQ163038
genomic: CAAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTCAAGgttcacctct ... ctacttacagAACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGCAATTTCT
EST: CAAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTCAAG AACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGCAATTTCTEST: gi|18963077|gb|BM660226.1|BM660226
genomic: CAAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTCAAGgttcacctct ... ctacttacagAACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGCAATTTCT
EST: CAAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTCAAG AACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGCAATTTCTEST: gi|87152622|gb|DY397411.1|DY397411
genomic: CAAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTCAAGgttcacctct ... ctacttacagAACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGCAATTTCT
EST: CAAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTCAAG AACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGCAATTTCTEST: gi|211484735|gb|FL156869.1|FL156869
genomic: CAAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTCAAGgttcacctct ... ctacttacagAACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGCAATTTCT
EST: CAAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTCAAG AACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGCAATTTCTEST: gi|89247987|gb|DY619773.1|DY619773
genomic: CAAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTCAAGgttcacctct ... ctacttacagAACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGCAATTTCT
EST: AAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTNCA-G AACGGTCACAGGTCTCGCAGATACATTATTCCCGAGEST: gi|76936894|gb|DV174950.1|DV174950
genomic: AAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTT-CAAGgttcacctct ... ctacttacagAACGGTCACAGGTCTCGCAGATACATTATTCCCGAG
EST: CAAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTCAAG AACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATGNCA-TTTC
genomic: CAAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTCAAGgttcacctct ... ctacttacagAACGGTCACAGGTCTCGCAGATACATTATTCCCGAGAGCCATG-CAATTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCTGCCCCATTTGCTCCCAAAGGGTTACAAGAGATATGCTTAACCATATGACCATGCAGCATGGTTACCTGTTCAAGgttcacctctctaccctcctacctttctctgcaataacattcttgataaaatttgcaagccttctgacgccctgtttttatttcctacttacag
- - - - - - - - - - - - - - AAGAGA