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GGCTGACAAGGCTGAAGAGGAAGAAAGCCCTATGATGGAAACTGTCAGGAGCAAATGTATTACACAGTTACTGCTGCTTGGGGCAATTGAGAGCATACAGgtaagcagtttccactttatatgcatgctcttagatttgagtccatccatggtctttctgacaatgtggatctggacgcaccttgtctgctatacagttg...
species | Zea mays |
transcript | GRMZM2G335287_T01 |
intron # | 28 |
splice site | 5' |
intron type | U2 |
EST: GCAAATGTATTACACAGTTACTGCTGCTTGGGGCAACTGAGAGCATACAG AAGAAGTATTGGAGCAGGCTAAAAGCTACACAGCAGATAGCAATAATGGATEST: gi|21987959|gb|BQ779487.1|BQ779487
genomic: GCAAATGTATTACACAGTTACTGCTGCTTGGGGCAATTGAGAGCATACAGgtaagcagtt ... aacatttcagAAGAAGTATTGGAGCAGGCTAAAAGCTACACAGCAGATAGCAATAATGGAT
EST: GCAAATGTATTACACAGTTACTGCTGCTTGGGGCAATTGAGAGCATACAG AAGAAGTATTGGAGCAGGCTAAAAGCTACACAGCAGATAGCAATAATGGATEST: gi|32935168|gb|CF039980.1|CF039980
genomic: GCAAATGTATTACACAGTTACTGCTGCTTGGGGCAATTGAGAGCATACAGgtaagcagtt ... aacatttcagAAGAAGTATTGGAGCAGGCTAAAAGCTACACAGCAGATAGCAATAATGGAT
EST: GCAAATGTATTACACAGTTACTGCTGCTTGGGGCAATTGAGAGCATACAG AAGAAGTATTGGAGCAGGCTAAAAGCTACACAGCAGATAGCAATAATGGATEST: gi|78113830|gb|DV532219.1|DV532219
genomic: GCAAATGTATTACACAGTTACTGCTGCTTGGGGCAATTGAGAGCATACAGgtaagcagtt ... aacatttcagAAGAAGTATTGGAGCAGGCTAAAAGCTACACAGCAGATAGCAATAATGGAT
EST: GCAAATGTATTACACAGTTACTGCTGCTTGGGGCAATTGAGAGCATACAG AAGAAGTATTGGAGCAGGCTAAAAGCTACACAGCAGATAGCAATAATGGATEST: gi|6626560|gb|AW258092.1|AW258092
genomic: GCAAATGTATTACACAGTTACTGCTGCTTGGGGCAATTGAGAGCATACAGgtaagcagtt ... aacatttcagAAGAAGTATTGGAGCAGGCTAAAAGCTACACAGCAGATAGCAATAATGGAT
EST: GCAAATGTATTACACAGTTACTGCTGCTTGGGGCAATTGAGAGCATACAG AAGAAGTATTGGAGCAGGCTAAAAGCTACACAGCAGATAGCAATAATGGATEST: gi|32933086|gb|CF037898.1|CF037898
genomic: GCAAATGTATTACACAGTTACTGCTGCTTGGGGCAATTGAGAGCATACAGgtaagcagtt ... aacatttcagAAGAAGTATTGGAGCAGGCTAAAAGCTACACAGCAGATAGCAATAATGGAT
EST: GCAAATGTATTACACAGTTACTGCTGCTTGGGGCAACTGAGAGCATACAG AAGAAGTATTGGAGCAGGCTAAAAGCTACACAGCAGATAGCAATAATGGAT
genomic: GCAAATGTATTACACAGTTACTGCTGCTTGGGGCAATTGAGAGCATACAGgtaagcagtt ... aacatttcagAAGAAGTATTGGAGCAGGCTAAAAGCTACACAGCAGATAGCAATAATGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTGACAAGGCTGAAGAGGAAGAAAGCCCTATGATGGAAACTGTCAGGAGCAAATGTATTACACAGTTACTGCTGCTTGGGGCAATTGAGAGCATACAGgtaagcagtttccactttatatgcatgctcttagatttgagtccatccatggtctttctgacaatgtggatctggacgcaccttgtctgctatacagttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA