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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTCGTTTCAATTGCTCTTGGCGCTTTAGTTCATCTGATTGAAGTTGGTGGTCACCAGTTCAGTGATGGTGATTGGGATACATTATTAAAGAGTATTAGgtattttctgaaattttgttcgtaccaattttttttacctttccattatttatttatttgtcactgttgatatcacttgtcag

Basic information

species Zea mays
transcript GRMZM2G335287_T01
intron # 25
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G335287_T01 (Zea mays), 5'ss of exon 25
lower sequence: LOC_Os07g37750.1 (Oryza sativa), 5'ss of exon 24
CTGTCGTTTCAATTGCTCTTGGCGCTTTAGTTCATCTGATTGAAGTTGGTGGTCACCAGTTCAGTGATGGTGATTGGGATACATTATTAAAGAGTATTAGgtattttctgaaattttgttcgtaccaattttttttacctttccattatttatttatttgtcactgttgatatcacttgtcag
|||| ||||||||||||||||| |||||||||||||| || || |||||||||||||| ||||||||  | || ||||| ||| |  ||||||| ||||||||| | || || || | ||  | || |||    |||  | | | ||  || || |  | | | |||| ||||||||||||||
CTGTTGTTTCAATTGCTCTTGGAGCTTTAGTTCATCTCATAGAGGTTGGTGGTCACCAATTCAGTGACAGCGACTGGGAAACACTTCTAAAGAGCATTAGgtatctcctcaagttctatt--ttcccattaaaattaattgtgcttttgttgttcacatattaatgttaatatcacttgtcag

upper sequence: GRMZM2G335287_T01 (Zea mays), 5'ss of exon 25
lower sequence: GLYMA13G17610.1 (Glycine max), 5'ss of exon 27
CTGTCGTTTCAATTGCTCTTGGCGCTTTAGTTCATCTGATTGAAGTTGGTGGTCACCAGTTCAGTGATGGTGATTGGGATACATTATTAAAGAGTATTAGgt----attttctgaaattttgttcgtaccaattttttttacctttccattatttatttatttgtcactgttgatatcacttgtcag
| || || |||||  ||||||| ||||| || ||||| |||||||||||||| ||||| ||||||||  |||| ||||| ||| || | || || || ||||    ||||| |   ||||| |    |   |||||| |||   |   || |  | |  |    ||| |  | || |   |   |||
CAGTGGTCTCAATATCTCTTGGTGCTTTGGTGCATCTCATTGAAGTTGGTGGACACCAATTCAGTGAAAGTGACTGGGACACACTACTTAAAAGCATAAGgtgtaaattttttcctattttctgaagattcatttttgttattctaatatcaactgtaaaacattcatt--taatcttgatctccag

upper sequence: GRMZM2G335287_T01 (Zea mays), 5'ss of exon 25
lower sequence: Vv11s0016g00170.t01 (Vitis vinifera), 5'ss of exon 27
CTGTCGTTTCAATTGCTCTTGGCGCTTTAGTTCATCTGATTGAAGTTGGTGGTCACCAGTTCAGTGATGGTGATTGGGATACATTATTAAAGAGTATTAGgtattttctgaaattttgttcgtaccaattttttttacctttccattatttatttatttgtcactgttgatatcacttgtcag
| || ||||||||  |||| || || ||||| ||||| || |||||||| || ||||| ||||||||  |||||||||||||||| || || || || ||||  ||       | |||||  | | | || |||  | |  |  ||| | || ||| |  |   |||    | ||   |    
CAGTGGTTTCAATCTCTCTGGGTGCATTAGTGCATCTCATAGAAGTTGGAGGACACCAATTCAGTGAGAGTGATTGGGATACATTGTTGAAAAGCATAAGgtgcttatc----tcttgttatttctagttatttccatcaat--attctctaattaatacttcttgtcatgaccaacag----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78113830|gb|DV532219.1|DV532219
EST:     CACCAGTTCAGTGATGGTGATTGGGATACATTATTAAAGAGTATTAG                         GGATGCATCATACACAACACAGCCTCTTGAATTGCTCAATTCATTAAGATT
genomic: CACCAGTTCAGTGATGGTGATTGGGATACATTATTAAAGAGTATTAGgtattttctg ... cacttgtcagGGATGCATCATACACAACACAGCCTCTTGAATTGCTCAATTCATTAAGATT