1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAGgttatttactgaactgtcagttcagaaaatatgtgaaaaacttcttatattaaaatttcactaattttaattatttcttctttcag
species | Zea mays |
transcript | GRMZM2G030422_T02 |
intron # | 23 |
splice site | 5' |
intron type | U2 |
EST: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGNCAGGAGCTGATGCCCAG TTATGNGTTTGGAACACGGATGGANGGGAGAANCAAAAGAACAGATTTTTGEST: gi|211016174|gb|FL013378.1|FL013378
genomic: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAGgttatttact ... cttctttcagTTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTG
EST: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAG TTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTGEST: gi|19351107|gb|BM895639.1|BM895639
genomic: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAGgttatttact ... cttctttcagTTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTG
EST: ATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAG TTATGTGTTTGGAACACGGATGGATGGGAGAAGCCAAAGAGCAGATTTTTGEST: gi|211016178|gb|FL013382.1|FL013382
genomic: ATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAGgttatttact ... cttctttcagTTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTG
EST: CTTTTCAAATGTGCTAAATGTTTTTAGTCTCGTCAGGAGCTGATGCCCAG TTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTGEST: gi|211018955|gb|FL013387.1|FL013387
genomic: CTTTTCAAATGTGCTAAATGTTTT-AGTCTCGTCAGGAGCTGATGCCCAGgttatttact ... cttctttcagTTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTG
EST: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAG TTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTGEST: gi|7227452|gb|AW566093.1|AW566093
genomic: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAGgttatttact ... cttctttcagTTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTG
EST: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAG TTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTGEST: gi|211016172|gb|FL013376.1|FL013376
genomic: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAGgttatttact ... cttctttcagTTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTG
EST: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAG TTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTGEST: gi|37422204|gb|CF648808.1|CF648808
genomic: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAGgttatttact ... cttctttcagTTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTG
EST: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAG TTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTGEST: gi|211016173|gb|FL013377.1|FL013377
genomic: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAGgttatttact ... cttctttcagTTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTG
EST: CCTTTTCAAATGNGCTAAATGGTTTAGTCTCGTCAGGAGCTGATGCCCAG TTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAANAACAGATTTTTGEST: gi|211016170|gb|FL013374.1|FL013374
genomic: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAGgttatttact ... cttctttcagTTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTG
EST: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAG TTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTGEST: gi|211018956|gb|FL013388.1|FL013388
genomic: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAGgttatttact ... cttctttcagTTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTG
EST: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAG TTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTGEST: gi|211016176|gb|FL013380.1|FL013380
genomic: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAGgttatttact ... cttctttcagTTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTG
EST: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAG TTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTGEST: gi|31360482|gb|CD444839.1|CD444839
genomic: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAGgttatttact ... cttctttcagTTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTG
EST: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAG TTATGTGTTTGGA-CACGGATGGATGGGAGAAEST: gi|211016181|gb|FL013385.1|FL013385
genomic: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAGgttatttact ... cttctttcagTTATGTGTTTGGAACACGGATGGATGGGAGAA
EST: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAG TTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTGEST: gi|211016177|gb|FL013381.1|FL013381
genomic: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAGgttatttact ... cttctttcagTTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTG
EST: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAG TTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTGEST: gi|211016179|gb|FL013383.1|FL013383
genomic: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAGgttatttact ... cttctttcagTTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTG
EST: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAG TTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTGEST: gi|22473365|gb|BU037845.1|BU037845
genomic: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAGgttatttact ... cttctttcagTTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTG
EST: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAG TTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTGEST: gi|37393773|gb|CF634152.1|CF634152
genomic: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAGgttatttact ... cttctttcagTTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTG
EST: TGCTAAATG-TTTAGTTTCGTCAGGAGCTGATGCCCCAG TTATGT-TTTTGAACACCGATGGGATGGGAGAAGCAAAAGAACAGATTTTEST: gi|76010934|gb|DT938104.1|DT938104
genomic: TGCTAAATGTTTTAGTCTCGTCAGGAGCTGATG-CCCAGgttatttact ... cttctttcagTTATGTGTTTGGAACACGGAT-GGATGGGAGAAGCAAAAGAACAGATTTT
EST: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAG TTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTG
genomic: CCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAGgttatttact ... cttctttcagTTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAGgttatttactgaactgtcagttcagaaaatatgtgaaaaacttcttatattaaaatttcactaattttaattatttcttctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT