1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
GAATCCGCTTTACCTGTTTGCCATATTTGTGATTTATCTTGTTGGAAAAGCCCTTTGGGTGCAATCAGAAATTGGCAGGGAATTCCAACATGGATTTgtgagtgttcaaattactttttgttgcactcgttagccacttgaatattgtctaatcaacttctctacccttgcgctattacgcag
species | Zea mays |
transcript | AC196426.3_FGT007 |
intron # | 21 |
splice site | 5' |
intron type | U2 |
EST: AAGCCCTTTGGGTGCAATCAGAAATTGGCAGGGAATTCCAACATGGATTT CTTCCTGCCATCCTTTCACTGTCGACGAAATTTGTTCCCACTGTAATGAACEST: gi|18385295|gb|BM418494.1|BM418494
genomic: AAGCCCTTTGGGTGCAATCAGAAATTGGCAGGGAATTCCAACATGGATTTgtgagtgttc ... tattacgcagCTTCCTGCCATCCTTTCACTGTCGACGAAATTTGTTCCCACTGTAATGAAC
EST: AAGCCCTTTGGGTGCAATCAGAAATTGGCAGGGAATTCCAACATGGATTT CTTCCTGCCATCCTTTCACTGTCGACGAAATTTGTTCCCACTGTAATGAACEST: gi|18383908|gb|BM417108.1|BM417108
genomic: AAGCCCTTTGGGTGCAATCAGAAATTGGCAGGGAATTCCAACATGGATTTgtgagtgttc ... tattacgcagCTTCCTGCCATCCTTTCACTGTCGACGAAATTTGTTCCCACTGTAATGAAC
EST: AAGCCCTTTGGGTGCAATCAGAAATTGGCAGGGAATTCCAACATGGATTT CTTCCTGCCATCCTTTCACTGTCGACGAAATTTGTTCCCACTGTAATGAACEST: gi|22489182|gb|BU049105.1|BU049105
genomic: AAGCCCTTTGGGTGCAATCAGAAATTGGCAGGGAATTCCAACATGGATTTgtgagtgttc ... tattacgcagCTTCCTGCCATCCTTTCACTGTCGACGAAATTTGTTCCCACTGTAATGAAC
EST: AAGCCCTTTGGGTGCAATCAGAAATTGGCAGGGAATTCCAACATGGATTT CTTCCTGCCATCCTTTCACTGTCGACGAAATTTGTTCCCACTGTAATGAAC
genomic: AAGCCCTTTGGGTGCAATCAGAAATTGGCAGGGAATTCCAACATGGATTTgtgagtgttc ... tattacgcagCTTCCTGCCATCCTTTCACTGTCGACGAAATTTGTTCCCACTGTAATGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATCCGCTTTACCTGTTTGCCATATTTGTGATTTATCTTGTTGGAAAAGCCCTTTGGGTGCAATCAGAAATTGGCAGGGAATTCCAACATGGATTTgtgagtgttcaaattactttttgttgcactcgttagccacttgaatattgtctaatcaacttctctacccttgcgctattacgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA