Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCCACAGGTGGACGGAACTGGCTCCGGCACCACCGTCGACTTCAAGTTCTGCGCCTCCTGCTCGTACAGgtgattccatctacttaacgttggatttcttaattggcatggagttggaggaacatgaaattatggttggtgacaacgattcattgtagtagttactgaa...

Basic information

species Zea mays
transcript GRMZM5G897342_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G897342_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g61580.2 (Oryza sativa), 5'ss of exon 2
GAGCCACAGGTGGACGGAACTGGCTCCGGCACCACCGTCGACTTCAAGTTCTGCGCCTCCTGCTCGTACAGgtgattccatctacttaacgttggatttcttaattggcatggagttggaggaacatgaaattatggttggtgacaacgattcattgt-agt-agttactgaa--
||||| |||||||| ||  ||| |||||||||||||||||| || |||||||||||||||||||| || |||| |  |||| ||||   | | |  | | | |  ||   ||||||||   |    |    | |   | | |     ||| | || |  ||| | | || ||   
GAGCCGCAGGTGGATGGGCCTGCCTCCGGCACCACCGTCGAGTTGAAGTTCTGCGCCTCCTGCTCTTATAGgtaaaaccatgtactactcatggcttctgtcatctg---tggagttgttagctggtttggt-agaatcgatagtgtcgaataatggccagtgaatcacagatca

upper sequence: GRMZM5G897342_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g61580.3 (Oryza sativa), 5'ss of exon 2
GAGCCACAGGTGGACGGAACTGGCTCCGGCACCACCGTCGACTTCAAGTTCTGCGCCTCCTGCTCGTACAGgtgattccatctacttaacgttggatttcttaattggcatggagttggaggaacatgaaattatggttggtgacaacgattcattgt-agt-agttactgaa--
         ||||| ||  ||| |||||||||||||||||| || |||||||||||||||||||| || |||| |  |||| ||||   | | |  | | | |  ||   ||||||||   |    |    | |   | | |     ||| | || |  ||| | | || ||   
---------GTGGATGGGCCTGCCTCCGGCACCACCGTCGAGTTGAAGTTCTGCGCCTCCTGCTCTTATAGgtaaaaccatgtactactcatggcttctgtcatctg---tggagttgttagctggtttggt-agaatcgatagtgtcgaataatggccagtgaatcacagatca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31349680|gb|CD434037.1|CD434037
EST:     GGCTCCGGCACCACCGTCGACTTCAAGTTCTGCGCCTCCTGCTCGTACAG                         GGGAACTGCAATGACCATGAAACGGATGCTGGAAACCTCCTTTCCTGGGAT
genomic: GGCTCCGGCACCACCGTCGACTTCAAGTTCTGCGCCTCCTGCTCGTACAGgtgattccat ... aattctgtagGGGAACTGCAATGACCATGAAACGGATGCTGGAAACCTCCTTTCCTGGGAT
EST: gi|101398258|gb|EB821002.1|EB821002
EST:     GGCTCCGGCACCACCGTCGACTTCAAGTTCTGCGCCTCCTGCTCGTACAG                         GGGAACTGCAATGACCATGAAACGGATGCTGGAAACCTCCTTTCCTGGGAT
genomic: GGCTCCGGCACCACCGTCGACTTCAAGTTCTGCGCCTCCTGCTCGTACAGgtgattccat ... aattctgtagGGGAACTGCAATGACCATGAAACGGATGCTGGAAACCTCCTTTCCTGGGAT
EST: gi|56382517|gb|CV985186.1|CV985186
EST:     GGCTCCGGCACCACCGTCGACTTCAAGTTCTGCGCCTCCTGCTCGTACAG                         GGGAACTGCAATGACCATGAAACGGATGCTGGAAACCTCCTTTCCTGGGAT
genomic: GGCTCCGGCACCACCGTCGACTTCAAGTTCTGCGCCTCCTGCTCGTACAGgtgattccat ... aattctgtagGGGAACTGCAATGACCATGAAACGGATGCTGGAAACCTCCTTTCCTGGGAT
EST: gi|29946845|gb|CB816354.1|CB816354
EST:     GGCTCCGGCACCACCGTCGACTTCAAGTTCTGCGCCTCCTGCTCGTACAG                         GGGAACTGCAATGACCATGAAACGGATGCT-GAAACCTCCTTTCCTGGGAT
genomic: GGCTCCGGCACCACCGTCGACTTCAAGTTCTGCGCCTCCTGCTCGTACAGgtgattccat ... aattctgtagGGGAACTGCAATGACCATGAAACGGATGCTGGAAACCTCCTTTCCTGGGAT
EST: gi|37383739|gb|CF628900.1|CF628900
EST:     CGGCACCACCGTCGACTTCAAGTTCTGCGCCTCCTGCTCGTACAG                         GGGAACTGCAATGACCATGAAACGGATGCTGGAAACCTCCTTTCCTGGGAT
genomic: CGGCACCACCGTCGACTTCAAGTTCTGCGCCTCCTGCTCGTACAGgtgattccat ... aattctgtagGGGAACTGCAATGACCATGAAACGGATGCTGGAAACCTCCTTTCCTGGGAT
EST: gi|24763701|gb|CA398872.1|CA398872
EST:     GGCTCCGGCACCACCGTCGACTTCAAGTTCTGCGCCTCCTGCTCGTACAG                         GGGAACTGCAATGACCATGAAACGGATGCTGGAAACCTCCTTTCCTGGGAT
genomic: GGCTCCGGCACCACCGTCGACTTCAAGTTCTGCGCCTCCTGCTCGTACAGgtgattccat ... aattctgtagGGGAACTGCAATGACCATGAAACGGATGCTGGAAACCTCCTTTCCTGGGAT
EST: gi|14203675|gb|BG837352.1|BG837352
EST:     GGCTCCGGCACCACCGTCGACTTCAAGTTCTGCGCCTCCTGCTCGTACAG                         GGGAACTGCAATGACCATGAAACGGATGCTGGAAACCTCCTTTCCTGGGAT
genomic: GGCTCCGGCACCACCGTCGACTTCAAGTTCTGCGCCTCCTGCTCGTACAGgtgattccat ... aattctgtagGGGAACTGCAATGACCATGAAACGGATGCTGGAAACCTCCTTTCCTGGGAT
EST: gi|211197448|gb|FL196886.1|FL196886
EST:     GGCTCCGGCACCACCGTCGACTTCAAGTTCTGCGCCTCCTGCTCGTACAG                         GGGAACTGCAATGACCATGAAACGGATGCTGGAAACCTCCTTTCCTGGGAT
genomic: GGCTCCGGCACCACCGTCGACTTCAAGTTCTGCGCCTCCTGCTCGTACAGgtgattccat ... aattctgtagGGGAACTGCAATGACCATGAAACGGATGCTGGAAACCTCCTTTCCTGGGAT
EST: gi|78122045|gb|DV540429.1|DV540429
EST:     GGCTCCGGCACCACCGTCGACTTCAAGTTCTGCGCCTCCTGCTCGTACAG                         GGGAACTGCAATGACCATGAAACGGATGCTGGAAACCTCCTTTCCTGGGAT
genomic: GGCTCCGGCACCACCGTCGACTTCAAGTTCTGCGCCTCCTGCTCGTACAGgtgattccat ... aattctgtagGGGAACTGCAATGACCATGAAACGGATGCTGGAAACCTCCTTTCCTGGGAT
EST: gi|37376649|gb|CF624876.1|CF624876
EST:     GGCTCCGGCACCACCGTCGACTTCAAGTTCTGCGCCTCCTGCTCGTACAG                         GGGAACTGCAATGACCATGAAACGGATGCTGGAAACCTCCTTTCCTGGGAT
genomic: GGCTCCGGCACCACCGTCGACTTCAAGTTCTGCGCCTCCTGCTCGTACAGgtgattccat ... aattctgtagGGGAACTGCAATGACCATGAAACGGATGCTGGAAACCTCCTTTCCTGGGAT
EST: gi|29945799|gb|CB815825.1|CB815825
EST:     CGTCGACTTCAAGTTCTGCGCCTCCTGCTCGTACAG                         GGGAACTGCAATGACCATGAAACGGATGCTGGAAACCTCCTTTCCTGGGAT
genomic: CGTCGACTTCAAGTTCTGCGCCTCCTGCTCGTACAGgtgattccat ... aattctgtagGGGAACTGCAATGACCATGAAACGGATGCTGGAAACCTCCTTTCCTGGGAT
EST: gi|24763702|gb|CA398873.1|CA398873
EST:     CTCCTGCTCGTACAG                         GGGAACTGCAATGACCATGAAACGGATGCTGGAAACCTCCTTTCCTGGGAT
genomic: CTCCTGCTCGTACAGgtgattccat ... aattctgtagGGGAACTGCAATGACCATGAAACGGATGCTGGAAACCTCCTTTCCTGGGAT
EST: gi|37400793|gb|CF637756.1|CF637756
EST:     GGCTCCGGCACCACCGTCGACTTCAAGTTCTGCGCCTCCTGCTCGTACAG                         GGGAACTGCAATGACCATGAAACGGATGCTGGAAACCTCCTTTCCTGGGAT
genomic: GGCTCCGGCACCACCGTCGACTTCAAGTTCTGCGCCTCCTGCTCGTACAGgtgattccat ... aattctgtagGGGAACTGCAATGACCATGAAACGGATGCTGGAAACCTCCTTTCCTGGGAT