1 5' 3' | 2 5' 3' | 3 5' 3' |
ACGGGTTCTCCAAGAGTGACATGAGGAGATTCGGGGCCGACGAGGGCCGCCGGGTTTACAAGGCACTGGAAAATGCTGCAGACCGTAAGATCAAAATCAGgcaagtatcgagtatcatacttgaactgtcagtttctataatgttggtgattattacttaaaccataggatgattggaattggaacattgacatgtagtt...
species | Zea mays |
transcript | GRMZM5G871154_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGGGTTTACAAGGCACTGGAAAATGCTGCAGACCGTAAGATCAAAATCAG GATTGTCCAGCACTCTGGATTTGCTCCTGATTTTGACCAAGAGAGCGCAGAEST: gi|89249478|gb|DY621264.1|DY621264
genomic: CGGGTTTACAAGGCACTGGAAAATGCTGCAGACCGTAAGATCAAAATCAGgcaagtatcg ... atcatttcagGATTGTCCAGCACTCTGGATTTGCTCCTGATTTTGACCAAGAGAGCGCAGA
EST: CGGGTTTACAAGGCACTGGAAAATGCTGCAGACCGTAAGATCAAAATCAG GATTGTCCAGCACTCTGGATTTGCTCCTGATTTTGACCAAGAGAGCGCAGAEST: gi|149101041|gb|EE187139.2|EE187139
genomic: CGGGTTTACAAGGCACTGGAAAATGCTGCAGACCGTAAGATCAAAATCAGgcaagtatcg ... atcatttcagGATTGTCCAGCACTCTGGATTTGCTCCTGATTTTGACCAAGAGAGCGCAGA
EST: CGGGTTTACAAGGCACTGGAAAATGCTGCAGACCGTAAGATCAAAATCAG GATTGTCCAGCACTCTGGATTTGCTCCTGATTTTGACCAAGAGAGCGCAGA
genomic: CGGGTTTACAAGGCACTGGAAAATGCTGCAGACCGTAAGATCAAAATCAGgcaagtatcg ... atcatttcagGATTGTCCAGCACTCTGGATTTGCTCCTGATTTTGACCAAGAGAGCGCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGGGTTCTCCAAGAGTGACATGAGGAGATTCGGGGCCGACGAGGGCCGCCGGGTTTACAAGGCACTGGAAAATGCTGCAGACCGTAAGATCAAAATCAGgcaagtatcgagtatcatacttgaactgtcagtttctataatgttggtgattattacttaaaccataggatgattggaattggaacattgacatgtagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA