1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGTTGGGAGAGGGAAATACAGTGAAGTCTTTGAGGGTATTAATGTTAACAATAATGAGAAATGCATCATTAAGATCCTCAAGCCTGTGAAGAAAAAGAAGgtagaccatgaatcctattgtatgcagtttgcaacttgttatcccctgaacctactattttagcggtgacaggctactgttttcttttcacacctgtttaaatttcataatttcagtgacaattttcatctcagttttaacatatgcttcttgtgctggtgcag
species | Zea mays |
transcript | GRMZM5G845755_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATAATGAGAAATGCATCATTAAGATCCTCAAGCCTGTGAAGAAAAAGAAG ATCAAAAGAGAAATTAAAATTCTTCAGAATCTTTATGGAGGCCCTAACATTEST: gi|148990948|gb|EE032377.2|EE032377
genomic: ATAATGAGAAATGCATCATTAAGATCCTCAAGCCTGTGAAGAAAAAGAAGgtagaccatg ... gctggtgcagATCAAAAGAGAAATTAAAATTCTTCAGAATCTTTATGGAGGCCCTAACATT
EST: ATAATGAGAAATGCATCATTAAGATCCTCAAGCCTGTGAAGAAAAAGAAG ATCAAAAGAGAAATTAAAATTCTTCAGAATCTTTATGGAGGCCCTAACATTEST: gi|29946904|gb|CB816382.1|CB816382
genomic: ATAATGAGAAATGCATCATTAAGATCCTCAAGCCTGTGAAGAAAAAGAAGgtagaccatg ... gctggtgcagATCAAAAGAGAAATTAAAATTCTTCAGAATCTTTATGGAGGCCCTAACATT
EST: ATAATGAGAAATGCATCATTAAGATCCTCAAGCCTGTGAAGAAAAAGAAG ATCAAAAGAGAAATTAAAATTCTTCAGAATCTTTATGGAGGCCCTAACATTEST: gi|31359089|gb|CD443446.1|CD443446
genomic: ATAATGAGAAATGCATCATTAAGATCCTCAAGCCTGTGAAGAAAAAGAAGgtagaccatg ... gctggtgcagATCAAAAGAGAAATTAAAATTCTTCAGAATCTTTATGGAGGCCCTAACATT
EST: CTCAAGCCTGTGAAGAAAAAGAAG ATCAAAAGAGAAATTAAAATTCTTCAGAATCTTTATGGAGGCCCTAACATTEST: gi|31355313|gb|CD439670.1|CD439670
genomic: CTCAAGCCTGTGAAGAAAAAGAAGgtagaccatg ... gctggtgcagATCAAAAGAGAAATTAAAATTCTTCAGAATCTTTATGGAGGCCCTAACATT
EST: ATAATGAGAAATGCATCATTAAGATCCTCAAGCCTGTGAAGAAAAAGAAG ATCAAAAGAGAAATTAAAATTCTTCAGAATCTTTATGGAGGCCCTAACATTEST: gi|5268357|gb|AI770321.1|AI770321
genomic: ATAATGAGAAATGCATCATTAAGATCCTCAAGCCTGTGAAGAAAAAGAAGgtagaccatg ... gctggtgcagATCAAAAGAGAAATTAAAATTCTTCAGAATCTTTATGGAGGCCCTAACATT
EST: ATAATGAGAAATGCATCATTAAGATCCTCAAGCCTGTGAAGAAAAAGAAG ATCAAAAGAGAAATTAAAATTCTTCAGAATCTTTATGGAGGCCCTAACATTEST: gi|149004751|gb|EE039248.2|EE039248
genomic: ATAATGAGAAATGCATCATTAAGATCCTCAAGCCTGTGAAGAAAAAGAAGgtagaccatg ... gctggtgcagATCAAAAGAGAAATTAAAATTCTTCAGAATCTTTATGGAGGCCCTAACATT
EST: ATAATGAGAAATGCATCATTAAGATCCTCAAGCCTGTGAAGAAAAAGAAG ATCAAAAGAGAAATTAAAATTCTTCAGAATCTTTATGGAGGCCCTAACATTEST: gi|31355927|gb|CD440284.1|CD440284
genomic: ATAATGAGAAATGCATCATTAAGATCCTCAAGCCTGTGAAGAAAAAGAAGgtagaccatg ... gctggtgcagATCAAAAGAGAAATTAAAATTCTTCAGAATCTTTATGGAGGCCCTAACATT
EST: ATAATGAGAAATGCATCATTAAGATCCTCAAGCCTGTGAAGAAAAAGAAG ATCAAAAGAGAAATTAAAATTCTTCAGAATCTTTATGGAGGCCCTAACATTEST: gi|149078770|gb|EE167579.2|EE167579
genomic: ATAATGAGAAATGCATCATTAAGATCCTCAAGCCTGTGAAGAAAAAGAAGgtagaccatg ... gctggtgcagATCAAAAGAGAAATTAAAATTCTTCAGAATCTTTATGGAGGCCCTAACATT
EST: TAATGAGAAATGCATCATTAAGATCCTCAAGCCTGTGAAGAAAAAAGAAG ATCAAAAGAGAAATTAAAATTCTTCAGAATCTTTATGGAGGCCCTAACAT
genomic: TAATGAGAAATGCATCATTAAGATCCTCAAGCCTGTGAAGAAAAA-GAAGgtagaccatg ... gctggtgcagATCAAAAGAGAAATTAAAATTCTTCAGAATCTTTATGGAGGCCCTAACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTGGGAGAGGGAAATACAGTGAAGTCTTTGAGGGTATTAATGTTAACAATAATGAGAAATGCATCATTAAGATCCTCAAGCCTGTGAAGAAAAAGAAGgtagaccatgaatcctattgtatgcagtttgcaacttgttatcccctgaacctactattttagcggtgacaggctactgttttcttttcacacctgtttaaatttcataatttcagtgacaattttcatctcagttttaacatatgcttcttgtgctggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG