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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATTGGTGCTATTTTCTCGGCAACAGATTCTGTTTGCACCTTACAGgtttgttgttgaacaatctgccattttatcttataaaaattgagataggaagccaatttaattggaaattcattacttgcag

Basic information

species Zea mays
transcript GRMZM2G701776_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G701776_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g05590.1 (Oryza sativa), 5'ss of exon 6
CAATTGGTGCTATTTTCTCGGCAACAGATTCTGTTTGCACCTTACAGgtttgtt-gttgaacaatctgccattt-tatcttataaaaattgagataggaagccaatttaattggaaattcattacttgcag
||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |   || ||  | |||   ||  | |||| |||||  ||| | || |  ||| |  |  || || ||  ||||||||||
CAATTGGGGCTATCTTCTCAGCAACAGATTCTGTTTGCACCTTACAGgtttttccatttaatgacctgttgttaatgtcttgtaaaa--tgaaacagcacaccattaaatatgcaattttgttacttgcag

upper sequence: GRMZM2G701776_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv07s0104g01280.t01 (Vitis vinifera), 5'ss of exon 5
CAATTGGTGCTATTTTCTCGGCAACAGATTCTGTTTGCACCTTACAGgtttgt---tgttgaacaatctgccattttatcttataaaaattgagataggaagccaatttaattggaaattcattacttgcag-----
||||||| || ||||| || || |||||||||||||||||||| ||||| |     | ||    |  |||  ||| |   |    | ||| | || |  |   || ||       || ||     ||   |      
CAATTGGAGCAATTTTTTCAGCTACAGATTCTGTTTGCACCTTGCAGgtatagatatcttctcaaggctgtgattctgcttcc--ataatggggacaatagaacatttctgactaaagtttgcatctgatatggcag