1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTACATCAGATATCCGAGCAGCACTCCTTTTACTTTTGATCGGTAAATGCACAGCTGATCAGGAGGCACTGAAAGAGGTAGAAGGCAATGAGTTCTTCAGgtattctcctttttgactccattatcttggtaggttaagttgtaatgttaatctaatgcttgatatttgtccatttgattcaatcaacag
species | Zea mays |
transcript | GRMZM2G459642_T04 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACAGCTGATCAGGAGGCACTGAAAGAGGTAGAAGGCAATGAGTTCTTCAG GGGTCTTCTGGATGACACAGATTCAAGGGTAGCATACTATTCTGCCGCTTTEST: gi|60399844|gb|DN232654.1|DN232654
genomic: ACAGCTGATCAGGAGGCACTGAAAGAGGTAGAAGGCAATGAGTTCTTCAGgtattctcct ... caatcaacagGGGTCTTCTGGATGACACAGATTCAAGGGTAGCATACTATTCTGCCGCTTT
EST: ACAGCTGATCAGGAGGCACTGAAAGAGGTAGAAGGCAATGAGTTCTTCAG GGGTCTTCTGGATGACACAGATTCAAGGGTAGCATACTATTCTGCCGCTTTEST: gi|33091264|gb|CF051258.1|CF051258
genomic: ACAGCTGATCAGGAGGCACTGAAAGAGGTAGAAGGCAATGAGTTCTTCAGgtattctcct ... caatcaacagGGGTCTTCTGGATGACACAGATTCAAGGGTAGCATACTATTCTGCCGCTTT
EST: ACAGCTGATCAGTAGGCACTGAAAGAGGTAGAAGGCAATGAGTTCTTCAG GGGTCTTCTGGATGACACAGATTCAAGGGTAGCATACTATTCTGCCGCTTTEST: gi|60344784|gb|DN211757.1|DN211757
genomic: ACAGCTGATCAGGAGGCACTGAAAGAGGTAGAAGGCAATGAGTTCTTCAGgtattctcct ... caatcaacagGGGTCTTCTGGATGACACAGATTCAAGGGTAGCATACTATTCTGCCGCTTT
EST: ACAGCTGATCAGGAGGCACTGAAAGAGGTAGAAGGCAATGAGTTCTTCAG GGGTCTTCTGGATGACACAGATTCAAGGGTAGCATACTATTCTGCCGCTTTEST: gi|6056553|gb|AW090943.1|AW090943
genomic: ACAGCTGATCAGGAGGCACTGAAAGAGGTAGAAGGCAATGAGTTCTTCAGgtattctcct ... caatcaacagGGGTCTTCTGGATGACACAGATTCAAGGGTAGCATACTATTCTGCCGCTTT
EST: ACAGCTGATCAGGAGGCACTGAAAGAGGTAGAAGGCAATGAGTTCTTCAG GGGTCTTCTGGATGACACAGATTCAAGGGTAGCATACTATTCTGCCGCTTT
genomic: ACAGCTGATCAGGAGGCACTGAAAGAGGTAGAAGGCAATGAGTTCTTCAGgtattctcct ... caatcaacagGGGTCTTCTGGATGACACAGATTCAAGGGTAGCATACTATTCTGCCGCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACATCAGATATCCGAGCAGCACTCCTTTTACTTTTGATCGGTAAATGCACAGCTGATCAGGAGGCACTGAAAGAGGTAGAAGGCAATGAGTTCTTCAGgtattctcctttttgactccattatcttggtaggttaagttgtaatgttaatctaatgcttgatatttgtccatttgattcaatcaacag
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG