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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGATGGACCATCAGCTGAATTGGTTCCGCAAAGAGCAGAGAGCTGCAGGCCATGTTGTCCGGGTTTCTTCTGCCCTCGGGGCCTGACATGCATGATGCgtaagttttctttgaacaaaccccgacaaacatactggacccattttgcataaaaccaatggtattatattgtgggaagccctattgatttgaacacttc...

Basic information

species Zea mays
transcript GRMZM2G430675_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G430675_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv08s0040g01620.t01 (Vitis vinifera), 5'ss of exon 4
TCTGATGGAC-CATCAGCTGAATTGG--TTCCGCAAAGAGCAGAGAGCTGCAGGCCATGTTGTCCGGGTTTCTTCTGCCCTCGGGGCCTGACATGCATGATGCgtaagttttctttgaacaaaccccgacaaacatactggacccattttgca---taaaaccaatggtattatattgtgggaagccctattgatt-tgaacacttc
   | || || ||  |  |  |  |   | ||   |||  |      |||    || |||||| |||||||||||||||| | |||||| || |||||||| ||||||  |    |||  | | | | |   |     ||||  ||||        || | ||  |  | |||| |  |   |||     |  ||| |      |  
---GTTGAACTCAAAAATTCGAAGGACATGCCTTCAAGGACTCGTGACTGTCAACCTTGTTGTGCGGGTTTCTTCTGCCCCCAGGGCCTTACTTGCATGATACgtaaggata---tgataacaactctatttatcctttggaatcattgaaagctttacagcctttacttttatttcatctcaagaatcctgcattgttggtggtg-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18661984|gb|BM501682.1|BM501682
EST:     GCCATGTTGTCCGGGTTTCTTCTGCCCTCGGGGCCTGACATGCATGATGC                         TCATGGTTGTTTCTGCTTACCTGCTTTAAATTCACTATCAACTGTTTTCCA
genomic: GCCATGTTGTCCGGGTTTCTTCTGCCCTCGGGGCCTGACATGCATGATGCgtaagttttc ... tttttggcagTCATGGTTGTTTCTGCTTACCTGCTTTAAATTCACTATCAACTGTTTTCCA
EST: gi|18654968|gb|BM499773.1|BM499773
EST:     GCCATGTTGTCCGGGTTTCTTCTGCCCTCGGGGCCTGACATGCATGATGC                         TCATGGTTGTTTCTGCTTACCTGCTTTAAATTCACTATCAACTGTTTTCCA
genomic: GCCATGTTGTCCGGGTTTCTTCTGCCCTCGGGGCCTGACATGCATGATGCgtaagttttc ... tttttggcagTCATGGTTGTTTCTGCTTACCTGCTTTAAATTCACTATCAACTGTTTTCCA