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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGGGAGGCGAACAAGGAGATGGTTGTCTACCTTGTCGACGCCTCGCCCAAAATGTTCACCCCTGCCACCACCCAGgtgaggcacaagtactctagccacttaattcgacaatctgggtaccatttttatgtctctttatctgggtatcaattttttatgtctctattgggaaattaagacctgtgaagttgcatcattaagtttgttctagatttttgctactaaataacaacgtaaaatttcttttcag

Basic information

species Zea mays
transcript GRMZM2G414496_T08
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G414496_T07 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os07g08729.1 (Oryza sativa), 5'ss of exon 2
GAGAGGGAGGCGAACAAGGAGATGGTTGTCTACCTTGTCGACGCCTCGCCCAAAATGTTCACCCCTGCCACCACCCAGgtgaggcacaagtactctagccacttaattcgacaa-tctgggtaccatttttatgtctctttatctgggtatcaattttttatgtctctattgggaaattaagacctgtgaagttgcatcattaagtttgttctagatttttgctactaaataacaacgtaaaatttcttttcag
||||||||||| |||||||||||||| ||||||||  |||||||||||||||| |||||||||||||| ||||   ||||||    | || |   |   | | ||||| || || |||   | || | |    |      | |   |  || |    |  || |    | |||||   ||                                                                          
GAGAGGGAGGCCAACAAGGAGATGGTCGTCTACCTCATCGACGCCTCGCCCAAGATGTTCACCCCTGCGACCA---AGgtgaaattccagcagcttcagcgcctaatttgataaatctctctgccctgtgcgagctcaagtgtt--gcaattagcgatggatattgggaatgggatgata--------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211344603|gb|FK981657.1|FK981657
EST:     TCTACCTTGTCGACGCCTCGCCCAAAATGTTCACCCCTGCCACCACCCAG                         GACAATGAAAAGCAGGAGACACATTTCCATACCATTGTTAACTGCATCACA
genomic: TCTACCTTGTCGACGCCTCGCCCAAAATGTTCACCCCTGCCACCACCCAGgtgaggcaca ... ttcttttcagGACAATGAAAAGCAGGAGACACATTTCCATACCATTGTTAACTGCATCACA
EST: gi|211344604|gb|FK981658.1|FK981658
EST:     TCTACCTTGTCGACGCCTCGCCCAAAATGTTCACCCCTGCCACCACCCAG                         GACAATGAAAAGCAGGAGACACATTTCCATACCATTGTTAACTGCATCACA
genomic: TCTACCTTGTCGACGCCTCGCCCAAAATGTTCACCCCTGCCACCACCCAGgtgaggcaca ... ttcttttcagGACAATGAAAAGCAGGAGACACATTTCCATACCATTGTTAACTGCATCACA