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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCATAGAGTAAGAACGAGGCATGGCTCTCTTTCGGTTTCTGTGTATGGAGACGAGGACAAGCCCGCGCTCGTAACTTATCCGGATGTAGCCTTAAATCgtgagtgcctttgttgcctctagaattttatttttttcttggtaaaggcagcaagctctgccatagaagacacaggaacttaacattgggcaaattcttcctgtgtgctag

Basic information

species Zea mays
transcript GRMZM2G413857_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G413857_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g09670.1 (Oryza sativa), 5'ss of exon 2
GAGCATAGAGTAAGAACGAGGCATGGCTCTCTTTCGGTTTCTGTGTATGGAGACGAGGACAAGCCCGCGCTCGTAACTTATCCGGATGTAGCCTTAAATCgtgagtgcctttgttgcctctagaattttatttttttcttggtaaaggca-gcaagctctgccatagaagacacaggaacttaacattgggcaaattcttcctgtgtgctag
|| ||  ||||  |||| ||  |||||||| | || |||||||| | |||||| || |||||||| |||||| |||| || |||||||||||  ||||| ||||||    |  |  ||| |  | |||          | ||| || ||  || |  | | |||| | ||     || |  | |  |||  | | || ||  ||| || |||
GAACACCGAGTGCGAACCAGATATGGCTCTGTATCTGTTTCTGTATTTGGAGATGAAGACAAGCCGGCGCTCATAACATACCCGGATGTAGCTCTAAATTgtgagttttctgatgacctttcaagtttg---------taggtgaaagcttgctaatttttccatggcag-----ggtagctgatgttg--ctatttttttttgtttggtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89761919|gb|DY689741.1|DY689741
EST:     AGACGAGGACAAGCCCGCGCTCGTAACTTATCCGGATGTAGCCTTAAATC                         ACATGTCTTGCTTCCAAGGATTGTTCTTCTGTCCGGAGGCTGCGTCCCTGT
genomic: AGACGAGGACAAGCCCGCGCTCGTAACTTATCCGGATGTAGCCTTAAATCgtgagtgcct ... tgtgtgctagACATGTCTTGCTTCCAAGGATTGTTCTTCTGTCCGGAGGCTGCGTCCCTGT
EST: gi|211370584|gb|FL353380.1|FL353380
EST:     AGACGAGGACAAGCCCGCGCTCGTAACTTATCCGGATGTAGCCTTAAATC                         ACATGTCTTGCTTCCAAGGATTGTTCTTCTGTCCGGAG-CTGCGTCCCTGT
genomic: AGACGAGGACAAGCCCGCGCTCGTAACTTATCCGGATGTAGCCTTAAATCgtgagtgcct ... tgtgtgctagACATGTCTTGCTTCCAAGGATTGTTCTTCTGTCCGGAGGCTGCGTCCCTGT
EST: gi|71443344|gb|DR824394.1|DR824394
EST:     AGACGAGGACAAGCCCGCGCTCGTAACTTATCCGGATGTAGCCTTAAATC                         ACATGTCTTGCTTCCAAGGATTGTTCTTCTGTCCGGAGGCTGCGTCCCTGT
genomic: AGACGAGGACAAGCCCGCGCTCGTAACTTATCCGGATGTAGCCTTAAATCgtgagtgcct ... tgtgtgctagACATGTCTTGCTTCCAAGGATTGTTCTTCTGTCCGGAGGCTGCGTCCCTGT
EST: gi|211436829|gb|FL403332.1|FL403332
EST:     AGGACAAGCCCGCGCTCGTAACTTATCCGGATGTAGCCTTAAATC                         ACATGTCTTGCTTCCAAGGATTGTTCTTCTGTCCGGAGGCTGCGTCCCTGT
genomic: AGGACAAGCCCGCGCTCGTAACTTATCCGGATGTAGCCTTAAATCgtgagtgcct ... tgtgtgctagACATGTCTTGCTTCCAAGGATTGTTCTTCTGTCCGGAGGCTGCGTCCCTGT
EST: gi|71443847|gb|DR824897.1|DR824897
EST:     AGACGAGGACAAGCCCGCGCTCGTAACTTATCCGGATGTAGCCTTAAATC                         ACATGTCTTGCTTCCAAGGATTGTTCTTCTGTCCGGAGGCTGCGTCCCTGT
genomic: AGACGAGGACAAGCCCGCGCTCGTAACTTATCCGGATGTAGCCTTAAATCgtgagtgcct ... tgtgtgctagACATGTCTTGCTTCCAAGGATTGTTCTTCTGTCCGGAGGCTGCGTCCCTGT