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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTACAATGAGAGAGTTTTGCCTTCAATCATCCATGAAACACTGAAAGCTGTTGTTGCTCAATACAATGCTAGTCAAGTCAGTTGATCACACAGAGAGAGgtacgattgaacgtatgaagttgctagtaactacttaatagcaattctgtttactcttttccgccaccaatttcag

Basic information

species Zea mays
transcript GRMZM2G352289_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G352289_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os07g15880.1 (Oryza sativa), 5'ss of exon 3
-----ACTACAATGAGAGAGTTTTGCCTTCAATCATCCATGAAACACTGAAAGCTGTTGTTGCTCAATACAATGCTAGTCAAGTCAGTTGATCACACAGAGAGAGgt--acgattgaacgtatgaagttgctagtaact---------acttaatagcaattctgtttactcttttccgccaccaatttcag-----------------
     ||| |||||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||      |||||| | |||||||||||||||||  |    ||||| ||||   ||  ||||   |         | || || |   |     |||||      ||| | |  |||                    
GGAGAACTTCAATGAGAGAGTTTTGCCTTCAATTATCCATGAAACACTTAAAGCTGTTGTCGCACAATACAATGC-----GAGTCAGCTAATCACACAGAGAGAGgttaagacctgaacatatgctttttatagtctttttttcttatatttgatgggggtcaacattacttgggggcgctaactgtttgtttcactctccaaatccag

upper sequence: GRMZM2G352289_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA09G30410.1 (Glycine max), 5'ss of exon 5
-----ACTACAATGAGAGAGTTTTGCCTTCAATCATCCATGAAACACTGAAAGCTGTTGTTGCTCAATACAATGCTAGTCA-------AGTCAGTTGATCACACAGAGAGAGgtacgattgaacgtatgaag------ttgctagtaactacttaatagcaattctgttta--ctcttttccgccaccaatttcag----
     | || ||||| || ||||| ||||||||||| ||||||||  ||||||| || ||||| || |||||||| || ||       | ||||        |  |||  | |      | | | | | ||       ||||| ||  |      |  ||||     || |   | ||||    |||   ||  |     
AGAGAATTATAATGAAAGGGTTTTACCTTCAATCATACATGAAACTTTGAAAGCCGTGGTTGCCCAGTACAATGCCAGCCAGCTTATTACTCAGCGAGAGgtaaggagcaaagcgaatataaccatttaaaaaaaagattgcttgttgcggaggtagtgcaaaataattgaagttttttttgaacacttgttggaagccc

upper sequence: GRMZM2G352289_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA12G33520.1 (Glycine max), 5'ss of exon 4
-----ACTACAATGAGAGAGTTTTGCCTTCAATCATCCATGAAACACTGAAAGCTGTTGTTGCTCAATACAATGCTAGTCAAGTCAGTTGATCACACAGAGA-GAGgtacga---ttgaacgtatgaagt--------tgctagtaactacttaatagcaattctgtttactcttttccgccaccaa--tttcag------
     | || ||||| || ||||| ||||||||||| ||||||||  ||||||| || ||||| || |||||||| || ||  | | ||  |||   ||||   |||  | |   ||    |||||| |           | | |||| | |||| |  |  |   ||    ||     |    |||  |||         
AGAGAATTATAATGAAAGGGTTTTACCTTCAATCATACATGAAACTTTGAAAGCCGTGGTTGCCCAGTACAATGCCAGCCAGCTTA-TTACTCAGCGAGAGgtaaggagcaaaccttatctgtatgatgcatgaaaagctcaaataaccatttaaaaaaagattgcttgttgctgagatggtgtcaaaattttgatttttt

upper sequence: GRMZM2G352289_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv19s0085g00730.t01 (Vitis vinifera), 5'ss of exon 5
-----ACTACAATGAGAGAGTTTTGCCTTCAATCATCCATGAAACACTGAAAGCTGTTGTTGCTCAATACAATGCTAGTCAAGTCAGTTGATCACACAGAGAGAGgtacgattgaacgtatgaagttgctagtaactacttaatagcaattctgtt-tactcttttccgccac-caatttcag------------------------
     |||||||||| |||||  |||||||||| || |||||||| ||||||||||| ||||| || || |||||||     | ||| | || || |||||||||||| |  |||||        ||   |  |  |  ||||| |||| | ||   ||    | || |  |   | |   ||                        
TGAGAACTACAATGAAAGAGTCCTGCCTTCAATAATTCATGAAACTCTGAAAGCTGTGGTTGCACAGTATAATGCTA-----GCCAGCTTATTACTCAGAGAGAGgtaggtctgaactgtctttcttttaaacagtt--ttaattgcaaatttgaagtatgagtatcagataaatagtgatagctgtttaagattaggattttgttt

upper sequence: GRMZM2G352289_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv15s0048g02350.t01 (Vitis vinifera), 5'ss of exon 5
-----ACTACAATGAGAGAGTTTTGCCTTCAATCATCCATGAAACACTGAAAGCTGTTGTTGCTCAATACAATGCTAGTCAAGTCAGTTGATCACACAGAGAGAGgta-cgattgaacgtatgaa-gttgctagtaactacttaatagcaattctgtttactcttttccgccaccaatttcag------------------
     |||||||||| |||||  |||| ||||| || |||||||| ||||||||||| ||||| || || |||||||| ||  | | ||  ||| |  |||  ||||| |  |    | | | ||   |  || |  | | ||   || |    | |    |   |   |  | | |||| ||                  
TGAGAACTACAATGAAAGAGTCCTGCCCTCAATAATTCATGAAACTCTGAAAGCTGTGGTTGCACAGTATAATGCTAGCCAGCTTA-TTACTCAGAGGGAGgtaggtaaccgtctttcttttaaacaattttaattgcaaatttgaagtatgagtatcagataaatagtgataactatttaagattaggattttgttttgc

upper sequence: GRMZM2G352289_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S215_63V6.1 (Physcomitrella patens), 5'ss of exon 3
-----ACTACAATGAGAGAGTTTTGCCTTCAATCATCCATGAAACACTGAAAGCTGTTGTTGCTCAATACAATGCTAGTCAAGTCAGTTGATCACACAGAGAGAGgtacgattgaa------cgtatgaagttgctagtaactacttaatagcaattctgtttactcttttccgccaccaatttcag---------------
     ||||   ||| ||||| || ||||||||| |||| |||||  ||||||| |||||||||||||| || ||||| ||| | |       ||   |||  ||     ||||||          |||||    || |    |  || ||| ||   ||  | |   ||| ||  | | | |  ||               
GCAGGACTATGCTGAAAGAGTGTTACCTTCAATCGTCCAGGAAACTTTGAAAGCAGTTGTTGCTCAATATAACGCTAGCCAACTTATCACGCAACGT-GAGgtagacttcattgaaatcttctccttgaagaatttattgttgagctattagtaagagtggct-cgggtttacgagaaccactgaagatttgtgtctttggt