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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATATCCAGATGGGCAAGCGTGAGGAGACTCGTGATGTTGCTAGAGTACTTTCTGGCTATAATGACATCATTATGGCTAGGGTCTTTGCTCACCAAgtatggtcatgagttgcataattaagatttcttttatgtggtctttttaccaacataaccaacaatgtcacataacctggatcatttttctttttacata...

Basic information

species Zea mays
transcript GRMZM2G349547_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G349547_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g47590.1 (Oryza sativa), 5'ss of exon 2
--ATGATATCCAGATGGGCAAGCGTGAGGAGACTCGTGATGTTGCTAGAGTACTTTCTGGCTATAATGACATCATTATGGCTAGGGTCTTTGCTCACCAAgtatggtcatgagttgcataattaagatttcttttatgtggtctttttaccaacataaccaacaatgtcacataacctggatc-atttttctttttacata-------
  ||||||||||||||||||||||||| ||||| |||||||||||| | || |||||||| |||||||||||||||||||| ||||| ||||||||||||||||| |||| ||   |    ||        || | | || ||| ||||||  || || | ||     |||| |  | | ||  |   | |   | | ||        
TGATGATATCCAGATGGGCAAGCGTGAAGAGACCCGTGATGTTGCTCGTGTGCTTTCTGGATATAATGACATCATTATGGCCAGGGTTTTTGCTCACCAAgtatgatcataaggccctggctt--------ttctgtttgatctgtttaccggcacaatctacttgtacacagatacagaatttaccctacacataaaatctgcatgc

upper sequence: GRMZM2G349547_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA04G03280.1 (Glycine max), 5'ss of exon 2
--ATGATATCCAGATGGGCAAGCGTGAGGAGACTCGTGATGTTGCTAGAGTACTTTCTGGCTATAATGACATCATTATGGCTAGGGTCTTTGCTCACCAAgtatggtcatgagttgcataattaagatttct----tttatgtggtctttttaccaacataaccaacaatgtcacataacctgga-tcatttttctttttacata
  |||||||||| ||||||||||| ||||||||||||||  ||||| | ||  | ||| ||||||||||||||||||||||| | || ||||||||  | ||||| |  |||   |   |  | || |   |    || || ||| | || ||||    | ||  |   |       |     || | || | |   | |     
TGATGATATCCAAATGGGCAAGCGAGAGGAGACTCGTGACATTGCTCGTGTTTTGTCTCGCTATAATGACATCATTATGGCTCGTGTTTTTGCTCATAAGgtatgctggtgaccagtgaatgtgagttacttgtatttcatttggccattgtaccgcagttactcatgtttgtggtcagtgaagaattatatctgcatct-----

upper sequence: GRMZM2G349547_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA06G03360.1 (Glycine max), 5'ss of exon 2
--ATGATATCCAGATGGGCAAGCGTGAGGAGACTCGTGATGTTGCTAGAGTACTTTCTGGCTATAATGACATCATTATGGCTAGGGTCTTTGCTCACCAAgtatggtcatgagttgcataattaa---gatttcttttatgtggtctttttaccaacataaccaacaatgtcacataacctgga-tcatttttctttttacata
  |||| ||||| ||||||||||| ||||||||||||||  ||||| | ||  | ||| ||||||||||||||||||||||| | || ||||||||  | ||||| |  |||   |   |  | |     ||| ||| || ||| | ||  || |   | ||  |   |      ||     || | || | |   | ||    
CGATGACATCCAAATGGGCAAGCGAGAGGAGACTCGTGACATTGCTCGTGTTTTGTCTCGCTATAATGACATCATTATGGCTCGTGTTTTTGCTCATAAGgtatgctggtgaccggtgaatgtgacttactttatttcatttggccattggactacagttactcatgtttatggttagtgaagaattatctctgcctcta----

upper sequence: GRMZM2G349547_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT1G75330.1 (Arabidopsis thaliana), 5'ss of exon 2
--ATGATATCCAGATGGGCAAGCGTGAGGAGACTCGTGATGTTGCTAGAGTACTTTCTGGCTATAATGACATCATTATGGCTAGGGTCTTTGCTCACCAAgtatggtcatgagttgcataattaagatttcttttatgtggtctttttaccaacataaccaacaat-gtcacataacctggatcatttttctttttacata
  |||| || |||||||| ||||| ||||| ||||||||||||||| | || |||||  ||||||||||||||||||||||| | || |||||||| || ||||| |  ||||||    | | |  | |      |  |      | ||| |||||  | |    | ||   |    | | |  ||   |   ||  ||| 
CAATGACATTCAGATGGGTAAGCGGGAGGAAACTCGTGATGTTGCTCGTGTTCTTTCACGCTATAATGACATCATTATGGCTCGTGTATTTGCTCATCAGgtatgctggtgagtttttgattgattaataagggaacattagaagtgtacaaacatttctatggcttgttctaatctcagaaagataactgcattctcat-

upper sequence: GRMZM2G349547_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv18s0001g12780.t01 (Vitis vinifera), 5'ss of exon 2
--ATGATATCCAGATGGGCAAGCGTGAGGAGACTCGTGATGTTGCTAGAGTACTTTCTGGCTATAATGACATCATTATGGCTAGGGTCTTTGCTCACCAAgtatggtcatgagttgcataattaagatttcttttatgtggtctttttaccaacataaccaacaatgtc-acataacctggat-catttttctttttacata-
  |||||||||||||||| || || ||||| ||||||||||||||| | || || ||| | ||||||||||||||||||||  | || |||||||| || ||||| |  ||||||   ||||   | ||  |  ||    |  ||        | |    |    | |  | | ||  | |||  |||   ||| |     | 
AGATGATATCCAGATGGGTAAACGGGAGGAAACTCGTGATGTTGCTCGTGTGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAGgtatgctggtgagttttttaat---gtttggtagtactcagatttcaattggtcttgcatatgtgtatttaaagaaggtagatatattccacttctgttgcag