1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGGCTTGGGCCGTACTCGACTAGCATTAAGAAGGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgataattctattatgatctttttggtgtggcgatggagatgtagggcagtttgtttctgagtcggtcctaaggataggtttcatcacttcgtgg...
species | Zea mays |
transcript | GRMZM2G181359_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGEST: gi|148939474|gb|EC884049.2|EC884049
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGEST: gi|32909117|gb|CF013929.1|CF013929
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGEST: gi|32835480|gb|CD975158.1|CD975158
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGEST: gi|148986522|gb|EE030276.2|EE030276
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGEST: gi|148941059|gb|EC885918.2|EC885918
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGEST: gi|28987578|gb|CB351704.1|CB351704
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGEST: gi|148940274|gb|EC885053.2|EC885053
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGEST: gi|211087536|gb|FL161883.1|FL161883
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGEST: gi|149102256|gb|EE287643.2|EE287643
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGEST: gi|148940455|gb|EC885254.2|EC885254
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGEST: gi|32833938|gb|CD973616.1|CD973616
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGEST: gi|148981623|gb|EE027766.2|EE027766
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGEST: gi|26457221|gb|CA828804.1|CA828804
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGEST: gi|149078548|gb|EE167330.2|EE167330
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGEST: gi|211087533|gb|FL161880.1|FL161880
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGEST: gi|211087537|gb|FL161884.1|FL161884
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATANCAGGGTTGGCTCCACCTAGCCAGTGGGATTTGEST: gi|148933068|gb|EE285985.2|EE285985
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATA-CAGGGTTGGCTCCACCTAGCCAGTGGGATTTG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGEST: gi|67042393|gb|CO468648.1|CO468648
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGEST: gi|149004352|gb|EE039050.2|EE039050
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGEST: gi|148933233|gb|EC876884.2|EC876884
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGEST: gi|148943018|gb|EC888066.2|EC888066
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGEST: gi|148952264|gb|EC898073.2|EC898073
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGEST: gi|60401248|gb|DN234055.1|DN234055
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGEST: gi|149077295|gb|EE165971.2|EE165971
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGEST: gi|211087539|gb|FL161886.1|FL161886
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGAEST: gi|21390185|gb|BQ528234.1|BQ528234
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
EST: GGTCGTTATGGAGATCATGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGEST: gi|148968071|gb|EE019406.2|EE019406
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGEST: gi|149040621|gb|EE046862.2|EE046862
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGEST: gi|149107887|gb|EE292247.2|EE292247
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGEST: gi|211087532|gb|FL161879.1|FL161879
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTG GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgata ... ctaaatgcagGTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGCTTGGGCCGTACTCGACTAGCATTAAGAAGGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAATGACCTTTGTGgtgagtgataattctattatgatctttttggtgtggcgatggagatgtagggcagtttgtttctgagtcggtcctaaggataggtttcatcacttcgtgg
- - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA