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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGAAACAGCAACAAAAATAGGATACTCGGAATTGgtgagtatcaactatcaaccctgagtctgcatttcatatctattacatcgggtctcattgcactaccgaactttgtagcatcttatgttgcagaatatgtatataggatcaattggctactgcatattgctaacgtttgtttattacactgtcatcggcag

Basic information

species Zea mays
transcript GRMZM2G171807_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71324627|gb|DR799013.1|DR799013
EST:     GAGGAAACAGCAACAAAAATAGGATACTCGGAATTG                         TTTGTGGAGTAGCAGGAGGCGGTCTATTGGTAGTGTCAGTGTGCTTCTTTT
genomic: GAGGAAACAGCAACAAAAATAGGATACTCGGAATTGgtgagtatca ... tcatcggcagTTTGTGGAGTAGCAGGAGGCGGTCTATTGGTAGTGTCAGTGTGCTTCTTTT
EST: gi|78075743|gb|DV504177.1|DV504177
EST:     GAGGAAACAGCAAACAAAA-TAGGATACTCGGAATTG                         TTTGTGGAGTAGCAAGAGGCGGTCTATTGGTAGTGT
genomic: GAGGAAACAGCAA-CAAAAATAGGATACTCGGAATTGgtgagtatca ... tcatcggcagTTTGTGGAGTAGCAGGAGGCGGTCTATTGGTAGTGT
EST: gi|78104925|gb|DV523343.1|DV523343
EST:     GAGGAAACAGCAACAAAAATAGGATACTCGGAATTG                         TTTGTGGAGTAGCAGGAGGCGGTCTATTGGTAGTGTCAGTGTGCTTCTTTT
genomic: GAGGAAACAGCAACAAAAATAGGATACTCGGAATTGgtgagtatca ... tcatcggcagTTTGTGGAGTAGCAGGAGGCGGTCTATTGGTAGTGTCAGTGTGCTTCTTTT