1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGGGCTGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCGgtaattttcttctccgctgttgattttttttttgtgaattatgagtattaaataaaaagtaaagagttgaaacgaagaaaattaaccgaattaaattaag...
species | Zea mays |
transcript | GRMZM2G160842_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGGAGGTTTGGGCTCTCCCCTGACATTGTATCTAGCAGCTTGTGGTGTCG GTCGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCEST: gi|211108194|gb|FL028200.1|FL028200
genomic: TGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCGgtaattttct ... atcttattagGTCGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATC
EST: TGGAGGTTTGGGCTCTCCCCTGACATTGTATCTAGCAGCTTGTGGTGTCG GTCGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCEST: gi|37423894|gb|CF649677.1|CF649677
genomic: TGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCGgtaattttct ... atcttattagGTCGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATC
EST: TGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCC GTCGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCEST: gi|149009441|gb|EE041457.2|EE041457
genomic: TGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCGgtaattttct ... atcttattagGTCGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATC
EST: TGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCCGCTTGTGGTGTCG GTCGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCCTCEST: gi|211107292|gb|FL028199.1|FL028199
genomic: TGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCGgtaattttct ... atcttattagGTCGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATC
EST: TGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCG GTCGCTTGGGCATTGTGGATGGTGATGATGTYGAATTGAATAATCTTCATCEST: gi|211108195|gb|FL028201.1|FL028201
genomic: TGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCGgtaattttct ... atcttattagGTCGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATC
EST: TGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCG GTCGCTTGGGCATTGTGGATGGTGATGATGEST: gi|148954835|gb|EC900308.2|EC900308
genomic: TGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCGgtaattttct ... atcttattagGTCGCTTGGGCATTGTGGATGGTGATGATG
EST: TGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCG GTCGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCEST: gi|89761475|gb|DY689476.1|DY689476
genomic: TGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCGgtaattttct ... atcttattagGTCGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATC
EST: TGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCG GTCGCTTGGGCATTGTGGATGGTGATGATGTTGAATTTGA-TAATCCTCATEST: gi|211107291|gb|FL028198.1|FL028198
genomic: TGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCGgtaattttct ... atcttattagGTCGCTTGGGCATTGTGGATGGTGATGATGTTGAATT-GAATAATCTTCAT
EST: TGGAGGTTTGGGCTCTCCCCTGACATTGTATCTAGCAGCTTGTGGTGTCG GTCGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATC
genomic: TGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCGgtaattttct ... atcttattagGTCGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGGGCTGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCGgtaattttcttctccgctgttgattttttttttgtgaattatgagtattaaataaaaagtaaagagttgaaacgaagaaaattaaccgaattaaattaag
- - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT