Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagtacttaatttgtcctatattgctttccgttgttttcagttattaatggcctaacagagaactgaattttgttgttggttgtttcag

Basic information

species Zea mays
transcript GRMZM2G155242_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155242_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g09250.2 (Oryza sativa), 5'ss of exon 2
GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagt-acttaatttgtcctatattgctttccgttgttt--tcagttattaatggcctaacagagaactgaattttgttgttggttgtttcag
||||||||| ||||||||||| ||||||||||| || |||||||||||||||||||| ||||||||||||| |||  | ||| |   | | || |  ||| |    | | ||  || ||| ||  |   || | |   |||||| |  || |||  |||   ||||
GGTGATGCTCGTGGGGTGGGGCGGCAACAACGGCTCAACGCTGACGGCTGGGGTCATCGCCAACAGGGAgtaagtgatcactcacgctctacttttctgcctaagctagcttcatctgttttttcttttctga-atttaactga-tgatggtgtgagtttaatcag

upper sequence: GRMZM2G155242_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S267_10V6.1 (Physcomitrella patens), 5'ss of exon 2
GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta---cttaatttgtcctatatt-gctttccgttgttttcagttattaatggcctaacagagaactgaattttgttgttggttgtttcag-------------------
  |||||||||| |||||||| ||||||||||| ||||| || ||||||||  |  |||| ||||| |||| |||  ||   ||    || ||  || || |  ||  |||   ||   ||||   |||  |   | |    ||   || ||   ||  || |                       
AATGATGCTTGTTGGGTGGGGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGAgtaagtcttagacctctccttctcgcattttcgtgttatgttagattggtttatc--tggttttctacaatgttgctcttcgtctgtgtctgctaacattttattagggtgtaacag

upper sequence: GRMZM2G155242_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S55_204V6.1 (Physcomitrella patens), 5'ss of exon 2
GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagtactt------------------aatttgtcctatattgctttccgttg----ttttcagttattaatggcctaacagagaactgaattttgttgttggt-tgtttcag---------------------------
  ||||||| || || ||||| ||||||||||||||||| || ||||||||  || | |||||||  |||| ||   | | |                  ||||     || ||||| || |  ||    ||||||  |  || |     || | |   ||| |||   ||    || ||||| |                            
AATGATGCTCGTCGGTTGGGGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgcttccttactcgcttctttctgggaattcactttagattgccttgctctgctgattttcatgttgtattttgtcaagaaatccctggattgatttacgtgtatgtttgatgagatgtgttgtctttgtggacgatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211253253|gb|FL003863.1|FL003863
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|31358692|gb|CD443049.1|CD443049
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|31359517|gb|CD443874.1|CD443874
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|8368121|gb|BE051066.1|BE051066
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211253245|gb|FL003855.1|FL003855
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGNGCGACCAAGGACAATGTGCAGCAAG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAG
EST: gi|211032316|gb|FK948197.1|FK948197
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211032319|gb|FK948200.1|FK948200
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|31353717|gb|CD438074.1|CD438074
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211032317|gb|FK948198.1|FK948198
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|149104837|gb|EE290302.2|EE290302
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211083904|gb|FL003852.1|FL003852
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|148934898|gb|EC878944.2|EC878944
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|31350876|gb|CD435233.1|CD435233
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|8368120|gb|BE051065.1|BE051065
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211037211|gb|FK948220.1|FK948220
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211032306|gb|FK948187.1|FK948187
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211253247|gb|FL003857.1|FL003857
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: G-AGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|149095755|gb|EE181394.2|EE181394
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211034765|gb|FK948208.1|FK948208
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|76019942|gb|DT947112.1|DT947112
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211083903|gb|FL003851.1|FL003851
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|31357666|gb|CD442023.1|CD442023
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|22472362|gb|BU036842.1|BU036842
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211039658|gb|FK948233.1|FK948233
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211029844|gb|FK948184.1|FK948184
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|31349014|gb|CD433371.1|CD433371
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211037210|gb|FK948219.1|FK948219
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|20208127|gb|BQ134201.1|BQ134201
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211083902|gb|FL003850.1|FL003850
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|26558443|gb|CA830678.1|CA830678
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211253248|gb|FL003858.1|FL003858
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211032311|gb|FK948192.1|FK948192
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211083899|gb|FL003847.1|FL003847
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211032315|gb|FK948196.1|FK948196
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211034769|gb|FK948212.1|FK948212
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211083895|gb|FL003843.1|FL003843
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211253252|gb|FL003862.1|FL003862
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|31359585|gb|CD443942.1|CD443942
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCATCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|149103373|gb|EE288760.2|EE288760
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211034759|gb|FK948202.1|FK948202
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACNG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211253246|gb|FL003856.1|FL003856
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGNA                         GGGGATCTCATGGGGCGACCAAAGACA-GGTGCAGCAAGCCAACTACTACG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGG-CGACCAAGGACAAGGTGCAGCAAGCCAACTACTACG
EST: gi|211083898|gb|FL003846.1|FL003846
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGG
EST: gi|21843169|gb|BQ703765.1|BQ703765
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211029842|gb|FK948182.1|FK948182
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211032307|gb|FK948188.1|FK948188
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 521

GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGGCTCCCTCACCCAGGCCTCCACCATCAGAGTCGGCAGCTACAACGGGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 167

GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGGCTCCCTCACCCAGGCCTCCACCATCAGAGTCGGCAGCTACAACGGGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 60

GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGGCTCCCTCACCCAGGCCTCCACCATCAGAGTCGGCAGCTACAACGGGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 370

GGTGATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtgagtagta ... gttgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGGCTCCCTCACCCAGGCCTCCACCATCAGAGTCGGCAGCTACAACGGGGAG