1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCAGGAAGGCCAAGTGGTGGTACTCCGCCTTCCACAATGTCACCGCCATGGTCGGCGCCGGCGTGCTCGGCCTCCCCTACGCCATGTCCGAGCTTGGCTGgtacgtatacttcatgtcacgaatcctaaatccggcttccgatgatgatcgattcgacctcaatacaagctaagaagattgatgagataagaaaaatcca...
species | Zea mays |
transcript | GRMZM2G149216_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTCGGCGCCGGCGTGCTCGGCCTCCCCTACGCCATGTCCGAGCTTGGCTG GGGCCCTGGCATCGCGGTGATGATCCTGTCGTGGATAATCACCCTATACACEST: gi|211293155|gb|FL094566.1|FL094566
genomic: GTCGGCGCCGGCGTGCTCGGCCTCCCCTACGCCATGTCCGAGCTTGGCTGgtacgtatac ... gtgcacacagGGGCCCTGGCATCGCGGTGATGATCCTGTCGTGGATAATCACCCTATACAC
EST: GTCGGCGCCGGCGTGCTCGGCCTCCCCTACGCCATGTCCGAGCTTGGCTG GGGCCCTGGCATCGCGGTGATGATCCTGTCGTGGATAATCACCCTATACAC
genomic: GTCGGCGCCGGCGTGCTCGGCCTCCCCTACGCCATGTCCGAGCTTGGCTGgtacgtatac ... gtgcacacagGGGCCCTGGCATCGCGGTGATGATCCTGTCGTGGATAATCACCCTATACAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAGGAAGGCCAAGTGGTGGTACTCCGCCTTCCACAATGTCACCGCCATGGTCGGCGCCGGCGTGCTCGGCCTCCCCTACGCCATGTCCGAGCTTGGCTGgtacgtatacttcatgtcacgaatcctaaatccggcttccgatgatgatcgattcgacctcaatacaagctaagaagattgatgagataagaaaaatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaagat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaaa