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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGACAGGAGGTGGAACCCGAAGGTCTCGGACTTCGGCCTCGCCAAGCTCCTGGGGGCGGACAGCAACTACGTCACCACCAGAGTGATGGGAACGTTTGGgtgggtgtgagccgccgccgtgcttaaaattttgagcttcttcccttccggggtgaaatgaaatgtccgatcgatgtgagagttcctttcttttttgttggaag

Basic information

species Zea mays
transcript GRMZM2G147051_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G147051_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g36050.1 (Oryza sativa), 5'ss of exon 4
TGGACAGGAGGTGGAACCCGAAGGTCTCGGACTTCGGCCTCGCCAAGCTCCTGGGGGCGGACAGCAACTACGTCACCACCAGAGTGATGGGAACGTTTGGgtgggtgtgagccgccgccgtgcttaaa-attttgagcttcttcccttccggggtgaaa----tgaaatgtccgatcgatgtgagagttcctttcttttttgttggaag
|||||| ||| |||||||| |||||||||||||| ||||||||||||||||| ||  | |||| |||||| || ||||| ||||| |||||||| |||||||  |  ||       |  || || ||   | | ||||    |    |    | ||  |    ||||   |  | ||  | ||    |   ||     ||||  |    
TGGACAAGAGATGGAACCCCAAGGTCTCGGACTTTGGCCTCGCCAAGCTCCTCGGTTCAGACAACAACTATGTTACCACGAGAGTCATGGGAACATTTGGgtaag-atggatg--tgaggttctcaattgtgtcgagcccggtgaaatgtaagatgtgagcactgaacactaaggtctctctggccatcgattctgcatttgcag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71762919|gb|DR960856.1|DR960856
EST:     CTGGGGGCGGACAGCAACTACGTCACCACCAGAGTGATGGGAACGTTTGG                         CTACGTGGCGCCAGAGTACGCTAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: CTGGGGGCGGACAGCAACTACGTCACCACCAGAGTGATGGGAACGTTTGGgtgggtgtga ... ttgttggaagCTACGTGGCGCCAGAGTACGCTAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|71308371|gb|DR790412.1|DR790412
EST:     CTGGGGGCGGACAGCAACTACGTCACCCCCAGAGTGATGGGAACGTTTGG                         CTACGTGGCGCCAGAGTACGCTAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: CTGGGGGCGGACAGCAACTACGTCACCACCAGAGTGATGGGAACGTTTGGgtgggtgtga ... ttgttggaagCTACGTGGCGCCAGAGTACGCTAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|71439998|gb|DR821048.1|DR821048
EST:     CTGGGGGCGGACAGCAACTACGTCACCACCAGAGTGATGGGAACGTTTGG                         CTACGTGGCGCCAGAGTACGCTAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: CTGGGGGCGGACAGCAACTACGTCACCACCAGAGTGATGGGAACGTTTGGgtgggtgtga ... ttgttggaagCTACGTGGCGCCAGAGTACGCTAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|31909329|gb|CD650864.1|CD650864
EST:     ACTACGTCACCACCAGAGTGATGGGAACGTTTGG                         CTACGTGGCGCCAGAGTACGCTAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: ACTACGTCACCACCAGAGTGATGGGAACGTTTGGgtgggtgtga ... ttgttggaagCTACGTGGCGCCAGAGTACGCTAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|30088116|gb|CB886321.1|CB886321
EST:     CACCACCAGAGTGATGGGAACGTTTGG                         CTACGTGGCGCCAGAGTACGCTAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: CACCACCAGAGTGATGGGAACGTTTGGgtgggtgtga ... ttgttggaagCTACGTGGCGCCAGAGTACGCTAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|31909517|gb|CD650958.1|CD650958
EST:     CTGGGGGCGGACAGCAACTACGTCACCACCAGAGTGATGGGAACGTTTGG                         CTACGTGGCGCCAGAGTACGCTAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: CTGGGGGCGGACAGCAACTACGTCACCACCAGAGTGATGGGAACGTTTGGgtgggtgtga ... ttgttggaagCTACGTGGCGCCAGAGTACGCTAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|28987043|gb|CB351436.1|CB351436
EST:     CTGGGGGCGGACAGCAACTACGTCACCACCAGAGTGATGGGAACGTTTGG                         CTACGTGGCGCCAGAGTACGCTAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: CTGGGGGCGGACAGCAACTACGTCACCACCAGAGTGATGGGAACGTTTGGgtgggtgtga ... ttgttggaagCTACGTGGCGCCAGAGTACGCTAGCACCGGCATGCTGAACGAGAGGAGCGA
EST: gi|71315686|gb|DR794464.1|DR794464
EST:     CTGGGGGCGGACAGCAACTACGTCACCACCAGAGTGATGGGAACGTTTGG                         CTACGTGGCGCCAGAGTACGCTAGCACCGGCATGCTGAACGAGAGGAGCGA
genomic: CTGGGGGCGGACAGCAACTACGTCACCACCAGAGTGATGGGAACGTTTGGgtgggtgtga ... ttgttggaagCTACGTGGCGCCAGAGTACGCTAGCACCGGCATGCTGAACGAGAGGAGCGA