1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AATGATGCTTCAACCTGCTGAGCGTTTAGTTGCATTTGCAATTCTGCATCAAGGTTATTCCTCACAGTCGGCAAATCCATTTCTTCCTCTCTTAATAAATgtaagctgtaaaacttgtctattccttttttattcagttttaagtagtaaatctgttggcatatgcattaactaaagcaacaatgtgggaaaacaaaagt...
species | Zea mays |
transcript | GRMZM2G133757_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAGGTTATTCCTCACAGTCGGCAAATCCATTTCTTCCTCTCTTAATAAAT GTTGCATGTGATGAAACTTCTGAGGCAGCAGACCAGGCGTTTCTCCAACTTEST: gi|74240369|gb|DT648283.1|DT648283
genomic: AAGGTTATTCCTCACAGTCGGCAAATCCATTTCTTCCTCTCTTAATAAATgtaagctgta ... tttcttgcagGTTGCATGTGATGAAACTTCTGAGGCAGCAGACCAGGCGTTTCTCCAACTT
EST: AAGGTTATTCCTCACAGTCGGCAAATCCATTTCTTCCTCTCTTAATAAAT GTTGCATGTGATGAAACTTCTGAGGCAGCAGACCAGGCGTTTCTCCAACTTEST: gi|74237046|gb|DT644960.1|DT644960
genomic: AAGGTTATTCCTCACAGTCGGCAAATCCATTTCTTCCTCTCTTAATAAATgtaagctgta ... tttcttgcagGTTGCATGTGATGAAACTTCTGAGGCAGCAGACCAGGCGTTTCTCCAACTT
EST: AAGGTTATTCCTCACAGTCGGCAAATCCATTTCTTCCTCTCTTAATAAAT GTTGCATGTGATGAAACTTCTGAGGCAGCAGACCAGGCGTTTCTCCAACTTEST: gi|91051391|gb|EB161809.1|EB161809
genomic: AAGGTTATTCCTCACAGTCGGCAAATCCATTTCTTCCTCTCTTAATAAATgtaagctgta ... tttcttgcagGTTGCATGTGATGAAACTTCTGAGGCAGCAGACCAGGCGTTTCTCCAACTT
EST: AAGGTTATTCCTCACAGTCGGCAAATCCATTTCTTCCTCTCTTAATAAAT GTTGCATGTGATGAAACTTCTGAGGCAGCAGACCAGGCGTTTCTCCAACTTEST: gi|37423952|gb|CF649706.1|CF649706
genomic: AAGGTTATTCCTCACAGTCGGCAAATCCATTTCTTCCTCTCTTAATAAATgtaagctgta ... tttcttgcagGTTGCATGTGATGAAACTTCTGAGGCAGCAGACCAGGCGTTTCTCCAACTT
EST: AAGGTTATTCCTCACAGTCGGCAAATCCATTTCTTCCTCTCTTAATAAAT GTTGCATGTGATGAAACTTCTGEST: gi|76289049|gb|DV028617.1|DV028617
genomic: AAGGTTATTCCTCACAGTCGGCAAATCCATTTCTTCCTCTCTTAATAAATgtaagctgta ... tttcttgcagGTTGCATGTGATGAAACTTCTG
EST: AAGGTTATTCCTCACAGTCGGCAAATCCATTTCTTCCTCTCTTAATAAAT GTTGCATGTGATGAAACTTCTGAGGCAGCAGACCAGGCGTTTCTCCAACTTEST: gi|78110369|gb|DV528781.1|DV528781
genomic: AAGGTTATTCCTCACAGTCGGCAAATCCATTTCTTCCTCTCTTAATAAATgtaagctgta ... tttcttgcagGTTGCATGTGATGAAACTTCTGAGGCAGCAGACCAGGCGTTTCTCCAACTT
EST: AAGGTTATTCCTCACAGTCGGCAAATCCATTTCTTCCTCTCTTAATAAAT GTTGCATGTGATGAAACTTCTGAGGCAGCAGACCAGGCGTTTCTCCAACTTEST: gi|76285618|gb|DV025186.1|DV025186
genomic: AAGGTTATTCCTCACAGTCGGCAAATCCATTTCTTCCTCTCTTAATAAATgtaagctgta ... tttcttgcagGTTGCATGTGATGAAACTTCTGAGGCAGCAGACCAGGCGTTTCTCCAACTT
EST: AAGGTTATTCCTCACAGTCGGCAAATCCATTTCTTCCTCTCTTAATAAAT GTTGCATGTGATGAAACTTCTGAGGCAGCAGACCAGGCGTTTCTCCAACTTEST: gi|101395524|gb|EB819690.1|EB819690
genomic: AAGGTTATTCCTCACAGTCGGCAAATCCATTTCTTCCTCTCTTAATAAATgtaagctgta ... tttcttgcagGTTGCATGTGATGAAACTTCTGAGGCAGCAGACCAGGCGTTTCTCCAACTT
EST: AAGGTTATTCCTCACAGTCGGCAAATCCATTTCTTCCTCTCTTAATAAAT GTTGCATGTGATGAAACTTCTGAGGCAGCAGACCAGGCGTTTCTCCAACTT
genomic: AAGGTTATTCCTCACAGTCGGCAAATCCATTTCTTCCTCTCTTAATAAATgtaagctgta ... tttcttgcagGTTGCATGTGATGAAACTTCTGAGGCAGCAGACCAGGCGTTTCTCCAACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGATGCTTCAACCTGCTGAGCGTTTAGTTGCATTTGCAATTCTGCATCAAGGTTATTCCTCACAGTCGGCAAATCCATTTCTTCCTCTCTTAATAAATgtaagctgtaaaacttgtctattccttttttattcagttttaagtagtaaatctgttggcatatgcattaactaaagcaacaatgtgggaaaacaaaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaaa