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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGTGCCGCGGCGGGAACGGGTGCAAGGTCGGCGACGACAACGGCAGCCTgtgagtgtgccttcaattccttgcattgatgattgtctgtttccggcctgtgccgctgcgcgctgccatgctgctgccggtgctcatcgccagccagatggatcgagctactaatccgcccgtcgtcgcgtctgccggccggccgtgcgctgacag

Basic information

species Zea mays
transcript GRMZM2G132251_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132251_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os11g25920.1 (Oryza sativa), 5'ss of exon 2
GCGGTGCCGCGGCGGGAACGGGTGCAAGGTCGGCGACGACAACGGCAGCCTgtgagtgtgccttcaattccttgcattgatgattgtctgtttccggcctgt-gccgctgcgcgctgccatgctgctgccggtgctcatcgccagccagatggatcgagctactaatccgcccgtcgtcgcgtctgccggccggccgtgcgctgacag
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||  |  |     |  |   | |     |     ||   |  | |    || | |  |  ||    |||  | |    |||       | ||| ||  ||                                                 
GCGGTGCCGCGGCGGCAACGGGTGCAAGGTCGGCGACGACAACGGCAGCCTgtaagtgagcaattgagcatatatacgcacg--cacccccaaccaatcgatcgatcgtgtgtgtagttatcaatctggggatat--atcat-----atatgtatgcag-------------------------------------------------

upper sequence: GRMZM2G132251_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 2
GCGGTGCCGCGGCGGGAACGGGTGCAAGGTCGGCGACGACAACGGCAGCCTgtgagtgtgccttcaattccttgcattgatgattgtctgtttccggcctgtgccgctgcgcgctgccatgctgctgccggtgctcatcgccagccagatggatcgagctactaatccgcccgtcgtcgcgtctgccggccggccgtgcgctgacag
  |     | || || || ||||||||||| || || |||||||||||| ||||||||||  |||  ||     | ||     |||| || || | |         | | | |  |  | |     |   ||    ||          ||| ||  |   |||                                            
AAGAGTTAGAGGAGGTAATGGGTGCAAGGTTGGAGATGACAACGGCAGCTTgtgagtgtggtttctgtttaccccctt-----ttgtttggttgctgagaaaaaaacagtggg--gaaacggaaaagaaagtcaatatt-----ttgaatgaatttaatgact--------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149098917|gb|EE184930.2|EE184930
EST:     CGGTGCCGCGGCGGGAACGGGTGCAAGGTCGGCGACGACAACGGCAGCCT                         GATGCTGATGTGGGAGGACGGCTTCTGCCGGCCGCGGGTGGCGGAGTGCCT
genomic: CGGTGCCGCGGCGGGAACGGGTGCAAGGTCGGCGACGACAACGGCAGCCTgtgagtgtgc ... gcgctgacagGATGCTGATGTGGGAGGACGGCTTCTGCCGGCCGCGGGTGGCGGAGTGCCT