1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTCGATGCCTATGGCTGTGTCGAAGAACCCAAAGATTGCCTTTATGTTCTTGACACCAGGTTCATTGCCTTTTGAGAAGTTGTGGGAGGAATTTTTACAGgtgcagtgcttatatatacccatcatctatttttggagttaacagatatgaagtttgtattatgtctgttgtattataaccattttgtaatagttcatttagtttgctcgaaattctttgcacag
species | Zea mays |
transcript | GRMZM2G124151_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGACACCAGGTTCATTGCCTTTTGAGAAGTTGTGGGAGGAATTTTTACAG GGTCATGATGGTCGATATTCCATCTATATCCATGCATCTCGTGAAATACCTEST: gi|149089528|gb|EE178775.2|EE178775
genomic: TGACACCAGGTTCATTGCCTTTTGAGAAGTTGTGGGAGGAATTTTTACAGgtgcagtgct ... ctttgcacagGGTCATGATGGTCGATATTCCATCTATATCCATGCATCTCGTGAAATACCT
EST: TGACACCAGGTTCATTGCCTTTTGAGAAGTTGTGGGAGGAATTTTTACAG GGTCATGATGGTCGATATTCCATCTATATCCATGCATCTCGTGAAATACCTEST: gi|149077297|gb|EE165973.2|EE165973
genomic: TGACACCAGGTTCATTGCCTTTTGAGAAGTTGTGGGAGGAATTTTTACAGgtgcagtgct ... ctttgcacagGGTCATGATGGTCGATATTCCATCTATATCCATGCATCTCGTGAAATACCT
EST: TGACACCAGGTTCATTGCCTTTTGAGAAGTTGTGGGAGGAATTTTTACAG GGTCATGATGGTCGATATTCCATCTATATCCATGCATCTCGTGAAATACCTEST: gi|71437254|gb|DR818304.1|DR818304
genomic: TGACACCAGGTTCATTGCCTTTTGAGAAGTTGTGGGAGGAATTTTTACAGgtgcagtgct ... ctttgcacagGGTCATGATGGTCGATATTCCATCTATATCCATGCATCTCGTGAAATACCT
EST: TGACACCAGGTTCATTGCCTTTTGAGAAGTTGTGGGAGGAATTTTTACAG GGTCATGATGGTCGATATTCCATCTATATCCATGCATCTCGTGAAATACCT
genomic: TGACACCAGGTTCATTGCCTTTTGAGAAGTTGTGGGAGGAATTTTTACAGgtgcagtgct ... ctttgcacagGGTCATGATGGTCGATATTCCATCTATATCCATGCATCTCGTGAAATACCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCGATGCCTATGGCTGTGTCGAAGAACCCAAAGATTGCCTTTATGTTCTTGACACCAGGTTCATTGCCTTTTGAGAAGTTGTGGGAGGAATTTTTACAGgtgcagtgcttatatatacccatcatctatttttggagttaacagatatgaagtttgtattatgtctgttgtattataaccattttgtaatagttcatttagtttgctcgaaattctttgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA