Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttcttaccccaaatggtttatgtcttggtagttgttagcaataggaagtcggaacttaaattcactcaactgctttgggcaacagggcatgtaat...

Basic information

species Zea mays
transcript GRMZM2G121820_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G121820_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g59440.3 (Oryza sativa), 5'ss of exon 1
----------------------------AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttcttac--cccaaatggttt-atgtcttggtagttgttagcaat-aggaagtcggaacttaaattcactcaactgctttgggcaacagggcatgtaat
                             |||||||| |||||||||||||||||||||||||||||||||||||| ||  |||| ||||| || |||||||||| | ||    ||||  |||||| ||   ||| ||||| ||  |||| |    ||   |  |  |||      |  |  ||| |  |    || |  ||| 
TTCTTGGAATACATCCCTCTTCTAACAGGGATCTTGGGAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGAAAGTTGGATCATCTGCAATATCTgtaagcttttcttgcccatgtggtttgattctttgctagttcttctcaattattttgttttacttctaatatg---acatagtttagtgattgaggtagataa-

upper sequence: GRMZM2G121820_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g59440.2 (Oryza sativa), 5'ss of exon 2
AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttcttac--cccaaatggttt-atgtcttggtagttgttagcaat-aggaagtcggaacttaaattcactcaactgctttgggcaacagggcatgtaat
 |||||||| |||||||||||||||||||||||||||||||||||||| ||  |||| ||||| || |||||||||| | ||    ||||  |||||| ||   ||| ||||| ||  |||| |    ||   |  |  |||      |  |  ||| |  |    || |  ||| 
GGATCTTGGGAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGAAAGTTGGATCATCTGCAATATCTgtaagcttttcttgcccatgtggtttgattctttgctagttcttctcaattattttgttttacttctaatatg---acatagtttagtgattgaggtagataa-

upper sequence: GRMZM2G121820_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA14G04520.1 (Glycine max), 5'ss of exon 2
AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt--accccaaatggtttatgtcttggtagttgttagcaataggaagtcggaacttaaattcactcaactgctttgggca-acagggcatgtaat
 ||||||||||| |  ||| ||||||| ||| |||| ||||| |||||||| ||||||||||| ||||||||||| ||| |   ||      |  | | | | ||   | |  |  |   | | ||||| |   ||||||   | |   || |      | |||   ||||||  
GGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAAGCTGGAGCATCTACAGTATCTgtatgttttctaactttgctttatattttttttcccaatattgtgagtttgtaagtctg---ttaaatgtgcccttatgatgcattgacacaatacatgtatc

upper sequence: GRMZM2G121820_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA02G44250.2 (Glycine max), 5'ss of exon 2
AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttcttaccccaaatggtttatgtcttggtagttgttagcaataggaagtcggaacttaaat-tcactcaac--tgctttgggcaacagggcatgtaat-
 ||||||||||| |  ||| ||||||| ||| |||| ||||| |||||||| ||||||||||| ||||||||||| ||| |    |       | ||| | ||      | || |  |    ||||| |   |||||| |  ||  |   ||| |||    |    |  | | || 
GGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAAGCTGGAGCATCTACAGTATCTgtatgttttctaactttgctttatattttttccccaatatt-gtgactttaagtctg---ttaaatgtggctttatgatgcattgatacaatatgtgtatcata

upper sequence: GRMZM2G121820_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv06s0009g01210.t01 (Vitis vinifera), 5'ss of exon 2
AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttcttaccccaaatggtttatgtcttggtagttgttagcaataggaagtcggaacttaaattcactcaactgctttgggcaacagggcatgtaat
 ||  | |||||||  ||| | |||||||||||||| ||||| |||||||| ||  || |||| ||||||||||| ||| ||  |    |  |||||      |    |||| |    |  |   |     ||    ||       |     |       | |    |    
GGACTTGGGTAATTCAAACCTCTCTGGTCATCTGGTACCTGAACTTGGGAAGCTCAAGTATCTGCAGTATCTgtatgtttttctctttgactgtttaatgtaggaggattgtgaatccttagttttttattctatggtttgtcttgcaataatctatggtatgttgagaggg

upper sequence: GRMZM2G121820_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv08s0040g00520.t01 (Vitis vinifera), 5'ss of exon 2
AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagt-tcttaccccaaatggtttatgtct--tggtagttgtta-gcaataggaagtcggaacttaaattcactcaactgcttt------gggcaacagggcatgtaat-------------------------------------------------------------------
 || ||||||| ||  |||||||| |||||||| || ||||| || |||||||| || ||||| |||||||||||||| ||||          ||| |  | |     ||     |  |      |  |||  |  |||  || |   ||  | | |      |  |||  |   |||| ||                                                                   
GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAACTCGAACATCTGCAGTATCTgtaagtgtcttttaatttgctgttaaaatttgccaataacgagtgcgttgcttggtgtcaaatgttagctttatgtaagagttctctatctgaacaattgttgatgtcatgtgatgtttggagcttataattcaaagccacagggaaatgaaattaaattaagttcttctcatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9733713|gb|BE512465.1|BE512465
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|17929723|gb|BM266689.1|BM266689
EST:     CCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: CCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|71763196|gb|DR961133.1|DR961133
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|91874179|gb|EB404136.1|EB404136
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|26557278|gb|CA829513.1|CA829513
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|71766703|gb|DR964640.1|DR964640
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|60358579|gb|DN225552.1|DN225552
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|15188221|gb|BI417198.1|BI417198
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGTTTCAATCCCTTCTGAGCTTGGCA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGG-AACAATCCCTTCTGAGCTTGGCA
EST: gi|30087058|gb|CB885266.1|CB885266
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|21809925|gb|BQ668243.1|BQ668243
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|22819416|gb|BU499506.1|BU499506
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|30032043|gb|CB833894.1|CB833894
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|5895619|gb|AW036865.1|AW036865
EST:     GGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: GGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|60394754|gb|DN227624.1|DN227624
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|148972291|gb|EE023193.2|EE023193
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|31612157|gb|CD568779.1|CD568779
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|211244696|gb|FL479034.1|FL479034
EST:     CTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: CTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|16137383|gb|BI894248.1|BI894248
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|22545940|gb|BU098299.1|BU098299
EST:     CTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: CTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|91873861|gb|EB403818.1|EB403818
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|22819407|gb|BU499497.1|BU499497
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|30306876|gb|CD001549.1|CD001549
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|109637591|gb|EC591136.1|EC591136
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|15177611|gb|BI398550.1|BI398550
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGTATCAATCCCTTCTGAGCTTGGCA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGG-AACAATCCCTTCTGAGCTTGGCA
EST: gi|71436702|gb|DR817752.1|DR817752
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|78089347|gb|DV517721.1|DV517721
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|211082646|gb|FL412210.1|FL412210
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAGTCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|148941830|gb|EC886803.2|EC886803
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|76012011|gb|DT939181.1|DT939181
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|4885819|gb|AI676939.1|AI676939
EST:     GGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: GGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|26559721|gb|CA831956.1|CA831956
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|9733712|gb|BE512464.1|BE512464
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|22545450|gb|BU097809.1|BU097809
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAGCCTTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|60349397|gb|DN216370.1|DN216370
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|148933347|gb|EC877009.2|EC877009
EST:     TGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|15177610|gb|BI398549.1|BI398549
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|28909789|gb|CB331101.1|CB331101
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|148933348|gb|EC877010.2|EC877010
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|149000066|gb|EE037172.2|EE037172
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|60396509|gb|DN229378.1|DN229378
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|149095177|gb|EE180794.2|EE180794
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|101383854|gb|EB813982.1|EB813982
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|15323606|gb|BI478890.1|BI478890
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|30306664|gb|CD001337.1|CD001337
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GG-ACTTTTATAAGAATACCATTCAAGGAACAATCCCTTCTGAGCTTGGCA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAAC-TTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCA
EST: gi|22549219|gb|BU101420.1|BU101420
EST:     CTGG-GCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: CTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|15323607|gb|BI478891.1|BI478891
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|30088202|gb|CB886407.1|CB886407
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAACCTGGAGCATCTTCAGTATCT                         GGACCTTTATAAGAATACCATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|149000067|gb|EE037173.2|EE037173
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|37373616|gb|CF623115.1|CF623115
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|18659525|gb|BM500384.1|BM500384
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|149000533|gb|EE037716.2|EE037716
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|78077979|gb|DV506396.1|DV506396
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|37396731|gb|CF635659.1|CF635659
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGTAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|71766702|gb|DR964639.1|DR964639
EST:     TCTGGTCATCTGGTGCCTGAGCTGGGGAAACGGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|78077978|gb|DV506395.1|DV506395
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|22521623|gb|BU080434.1|BU080434
EST:     GGTCATCTGG-GCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: GGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|60348625|gb|DN215598.1|DN215598
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|22546266|gb|BU098577.1|BU098577
EST:     CTGG-GCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: CTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|78089348|gb|DV517722.1|DV517722
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|31997810|gb|CD661783.1|CD661783
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|71448904|gb|DR829954.1|DR829954
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|30031710|gb|CB833561.1|CB833561
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|71319607|gb|DR796562.1|DR796562
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|71758054|gb|DR955991.1|DR955991
EST:     AGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: AGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|60398400|gb|DN231216.1|DN231216
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|14243408|gb|BG841108.2|BG841108
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGAAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|29576741|gb|CB616853.1|CB616853
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|148994954|gb|EE034307.2|EE034307
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|40334004|gb|CK368074.1|CK368074
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|37388668|gb|CF631545.1|CF631545
EST:     TCTGGTCATCTGGTGCCTGAGCTGGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
EST: gi|37381290|gb|CF627520.1|CF627520
EST:     TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT                         GGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 481

AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAATTTGAAGAATCTAATAAGCTTCGACTTGTACAAGAACAACATTTCGGGG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 436

AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAATTTGAAGAATCTAATAAGCTTCGACTTGTACAAGAACAACATTTCGGGG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 666

AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAATTTGAAGAATCTAATAAGCTTCGACTTGTACAAGAACAACATTTCGGGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 606

AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttctt ... actgaaacagGGAACTTTATAAGAATAACATTCAAGGAACAATCCCTTCTGAGCTTGGCAATTTGAAGAATCTAATAAGCTTCGACTTGTACAAGAACAACATTTCGGGG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCTgtaagttcttaccccaaatggtttatgtcttggtagttgttagcaataggaagtcggaacttaaattcactcaactgctttgggcaacagggcatgtaat

- - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA