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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACGGTGTGGGGTGACCCGGCTGACGTCGGCGCGGCCGTGGGAGGCGCGTCGTTCGACGTCGTCCTCGACAACAACGGCAAGGACCTCGACGCCGTCAAgtacgtccgagactcctcgcgccccctctgcatttcgcttcgccatatgcagacagcagacatcgacgaatgcatgcgtgtctcgctggtgactgtgccgctatgcgtgcgtccgcag

Basic information

species Zea mays
transcript GRMZM2G111216_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G111216_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os07g11110.1 (Oryza sativa), 5'ss of exon 2
GGACGGTGTGGGGTGACCCGGCTGACGTCGGCGCGGCCGTGGGAGGCG---CGTCGTTCGACGTCGTCCTCGACAACAACGGCAAGGACCTCGACGCCGTCAAgtacgtccgagactcctcgcgccccctctgcatttcgcttcgccatatgcagacagcagacatcgacgaatgc-atgcgtgtctcgctggtgactgtgccgctatgcgtgcgtccgcag
   |||||||||| |||||||| |||||||||||||| || || ||||   | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | ||||              |   ||||| ||    | |||| |  |    | | | |  | | | |||| || ||| |                              
---CGGTGTGGGGCGACCCGGCGGACGTCGGCGCGGCGGTCGGCGGCGGCGCCTCGTTCGACGTCGTCCTCGACAACAACGGCAAGGACCTCGACGCCGTCAAgtacgtc---gcctccctcgattattctcccccctcgctccga-gcaagcaggcgtcctg-accaaggtgttcgacgcgt-tcccgcag------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149105826|gb|EE291422.2|EE291422
EST:     TCGTTCGACGTCGTCCTCGACAACAACGGCAAGGACCTCGACGCCGTCAA                         GCCGGTGGCGGACTGGGCCAAGACGGCCGGCGTGGGGCAGTTCCTGTTCAT
genomic: TCGTTCGACGTCGTCCTCGACAACAACGGCAAGGACCTCGACGCCGTCAAgtacgtccga ... gcgtccgcagGCCGGTGGCGGACTGGGCCAAGACGGCCGGCGTGGGGCAGTTCCTGTTCAT
EST: gi|149082554|gb|EE171749.2|EE171749
EST:     TCGTTCGACGTCGTCCTCGACAACAACGGCAAGGACCTCGACGCCGTCAA                         GCCGGTGGCGGACTGGGCCAAGACGGCCGGCGTGGGGCAGTTCCTGTTCAT
genomic: TCGTTCGACGTCGTCCTCGACAACAACGGCAAGGACCTCGACGCCGTCAAgtacgtccga ... gcgtccgcagGCCGGTGGCGGACTGGGCCAAGACGGCCGGCGTGGGGCAGTTCCTGTTCAT
EST: gi|71763125|gb|DR961062.1|DR961062
EST:     TCGTTCGACGTCGTCCTCGACAACAACGGCAAGGACCTCGACGCCGTCAA                         GCCGGTGGCGGACTGGGCCAAGACGGCCGGCGTGGGGCAGTTCCTGTTCAT
genomic: TCGTTCGACGTCGTCCTCGACAACAACGGCAAGGACCTCGACGCCGTCAAgtacgtccga ... gcgtccgcagGCCGGTGGCGGACTGGGCCAAGACGGCCGGCGTGGGGCAGTTCCTGTTCAT
EST: gi|149094578|gb|EE180104.2|EE180104
EST:     TCGTTCGACGTCGTCCTCGACAACAACGGCAAGGACCTCGACGCCGTCAA                         GCCGGTGGCGGACTGGGCCAAGACGGCCGGCGTGGGGCAGTTCCTGTTCAT
genomic: TCGTTCGACGTCGTCCTCGACAACAACGGCAAGGACCTCGACGCCGTCAAgtacgtccga ... gcgtccgcagGCCGGTGGCGGACTGGGCCAAGACGGCCGGCGTGGGGCAGTTCCTGTTCAT
EST: gi|71448832|gb|DR829882.1|DR829882
EST:     TCGTTCGACGTCGTCCTCGACAACAACGGCAAGGACCTCGACGCCGTCAA                         GCCGGTGGCGGACTGGGCCAAGACGGCCGGCGTGGGGCAGTTCCTGTTCAT
genomic: TCGTTCGACGTCGTCCTCGACAACAACGGCAAGGACCTCGACGCCGTCAAgtacgtccga ... gcgtccgcagGCCGGTGGCGGACTGGGCCAAGACGGCCGGCGTGGGGCAGTTCCTGTTCAT