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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctagagtgtagttaagcgtagaattagcaaacgcctgtgtctatcagcacttcttcctttgcgatataagattaagattattcgaggtatttgct...

Basic information

species Zea mays
transcript GRMZM2G095657_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211411654|gb|FL321391.1|FL321391
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211349536|gb|FL331021.1|FL331021
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|18179372|gb|BM380582.1|BM380582
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211372145|gb|FL308210.1|FL308210
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACRNAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211164211|gb|FL365737.1|FL365737
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|40302744|gb|CK347131.1|CK347131
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|5928653|gb|AW056050.1|AW056050
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211037981|gb|FL322718.1|FL322718
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACNAA-TAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|8665320|gb|BE186136.1|BE186136
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|32937727|gb|CF042546.1|CF042546
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211005023|gb|FL355775.1|FL355775
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAASRNAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|78026051|gb|DV494438.1|DV494438
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211093303|gb|FL316196.1|FL316196
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211114259|gb|FL357297.1|FL357297
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACRNAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211165067|gb|FL319071.1|FL319071
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211023253|gb|FL322620.1|FL322620
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211517399|gb|FL346165.1|FL346165
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGRAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211208372|gb|FL341904.1|FL341904
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211417716|gb|FL354821.1|FL354821
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|32937284|gb|CF042103.1|CF042103
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211116305|gb|FL310188.1|FL310188
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACRNANATAAAAGCTGCGAATCT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAA-ATAAAAGCTGCGAATCT
EST: gi|211010670|gb|FL358960.1|FL358960
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211416251|gb|FK961679.1|FK961679
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211118161|gb|FL349420.1|FL349420
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|32799002|gb|CD951238.1|CD951238
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|15313447|gb|BI478712.1|BI478712
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|9028592|gb|BE238632.1|BE238632
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211235673|gb|FL362171.1|FL362171
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACRNAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211304199|gb|FL341146.1|FL341146
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|109637544|gb|EC591089.1|EC591089
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GGACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211107761|gb|FL329439.1|FL329439
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211525324|gb|FL320982.1|FL320982
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211367435|gb|FL332291.1|FL332291
EST:     AGNGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACC
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACC
EST: gi|71428332|gb|DR809382.1|DR809382
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211220871|gb|FL348997.1|FL348997
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211228774|gb|FL333480.1|FL333480
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|16926413|gb|BM079481.1|BM079481
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211475065|gb|FL327989.1|FL327989
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACSCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211417805|gb|FL360187.1|FL360187
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211289708|gb|FL361710.1|FL361710
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211404040|gb|FL322168.1|FL322168
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211406539|gb|FL321361.1|FL321361
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211218462|gb|FL333875.1|FL333875
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211477886|gb|FL342545.1|FL342545
EST:     AGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCCGAGAAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCT
genomic: AGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACG-CCGAG-AAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCT
EST: gi|211113123|gb|FL308003.1|FL308003
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|32796061|gb|CD948297.1|CD948297
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|33092383|gb|CF052377.1|CF052377
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|32914835|gb|CF019647.1|CF019647
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211116321|gb|FL311602.1|FL311602
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCA
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCA
EST: gi|211512458|gb|FL332418.1|FL332418
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|71428333|gb|DR809383.1|DR809383
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211108773|gb|FL338731.1|FL338731
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211489050|gb|FL326658.1|FL326658
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|37387179|gb|CF630782.1|CF630782
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|40333801|gb|CK367871.1|CK367871
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211369491|gb|FL308196.1|FL308196
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|12973415|gb|BG268469.1|BG268469
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211155871|gb|FL345387.1|FL345387
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|113702288|gb|EE679792.1|EE679792
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211289707|gb|FL361709.1|FL361709
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|32796041|gb|CD948277.1|CD948277
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211100854|gb|FL320686.1|FL320686
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|37375535|gb|CF624209.1|CF624209
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|32935416|gb|CF040228.1|CF040228
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|60340858|gb|DN207831.1|DN207831
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|67021431|gb|CO450180.1|CO450180
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211106052|gb|FL338697.1|FL338697
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCT-AGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|15214596|gb|BI431039.1|BI431039
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|61119155|gb|DN560116.1|DN560116
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|84980316|gb|DW530665.1|DW530665
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|32798777|gb|CD951013.1|CD951013
EST:     AGAGGGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCTGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAA
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAA
EST: gi|211459985|gb|FL331902.1|FL331902
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211469605|gb|FL315630.1|FL315630
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211043119|gb|FL310626.1|FL310626
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211196279|gb|FL364471.1|FL364471
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211463071|gb|FL352504.1|FL352504
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|116823829|gb|EC867406.1|EC867406
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|5607706|gb|AI901373.1|AI901373
EST:     AGAGAGCCGTCAAGCCCCCCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211362256|gb|FL335320.1|FL335320
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACNRAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT
EST: gi|211173783|gb|FL336641.1|FL336641
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGC
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGC
EST: gi|211258205|gb|FL352261.1|FL352261
EST:     AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAG                         GAACTCACCAAGTTCATCAACCAGTGCAACRAAATAAAAGCTGCGAATCTT
genomic: AGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 490

GAAAGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTTGCTAGCAAAGAGGGCGGTGACCTCAACATAGTGAAGGCGGATGGTGAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 597

GAAAGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTTGCTAGCAAAGAGGGCGGTGACCTCAACATAGTGAAGGCGGATGGTGAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 582

GAAAGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTTGCTAGCAAAGAGGGCGGTGACCTCAACATAGTGAAGGCGGATGGTGAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 398

GAAAGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctaga ... tgctttgcagGAACTCACCAAGTTCATCAACCAGTGCAACGAAATAAAAGCTGCGAATCTTGCTAGCAAAGAGGGCGGTGACCTCAACATAGTGAAGGCGGATGGTGAGG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAAGAGAGCCGTCAAGCCCACCAAGTTCACAAAGGACATGGACGCCGAGAAGgtatcctagagtgtagttaagcgtagaattagcaaacgcctgtgtctatcagcacttcttcctttgcgatataagattaagattattcgaggtatttgct

- - - - - - - - - - - - - - - - - -  CATGGA