Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACACAAGCGCATCGCTGACCATCAACGAGAACTATGACTCTGATGTGCAGGCTGACACTGAGACTTTTCTTAACAGAATTGTTCCAGAGgtcagtggcctaaatttttctcttctcttttaaatgctacaattaaaatgctgcttcgttatgtcatcgttttcag

Basic information

species Zea mays
transcript GRMZM2G092988_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092988_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g09460.1 (Oryza sativa), 5'ss of exon 3
-----CACACAAGCGCATCGCTGACCATCAACGAGAACTATGACTCTGATGTGCAGGCTGACACTGAGACTTTTCTTAACAGAATTGTTCCAGAGgtcagtggcctaaatttttctcttctctt-------ttaaat--gctacaattaaaatgctgcttcgttatgt---catcgttttcag
     ||||||||||| || || |||||||| |||||||||||||| ||||| || |||||||| || ||||| |||||| ||||||| ||||||||||||||    ||||| |||  ||| |        | |||   |  |  ||  ||  ||  |||| || |||   ||   |||||||
TGCAGCACACAAGCGCTTCCCTAACCATCAATGAGAACTATGACTCCGATGTACAAGCTGACACCGAAACTTTCCTTAACCGAATTGTACCAGAGgtcagtggttgcaatttgtcttgtctttgatcatgatcaaacaagggatcatgtaagagccacttcattgtgtgttcactattttcag

upper sequence: GRMZM2G092988_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT1G21065.1 (Arabidopsis thaliana), 5'ss of exon 3
-----CACACAAGCGCATCGCTGACCATCAACGAGAACTATGACTCTGATGTGCAGGCTGACACTGAGACTTTTCTTAACAGAATTGTTCCAGAGgtcagtggcctaaatttttctcttctcttttaaatgctacaattaaaatgctgcttcgttatgtcatcgt----tttcag
     |||||||| || || ||||| ||||| ||||| |||||  | ||||| |||||||| |||||||||||  | ||||| |||||||| |||||   |   |||  |   |  ||||||  || | || |    |    | | || |   || |||  | ||    ||||||
TACAACACACAAGTGCTTCTCTGACAATCAATGAGAATTATGATCCAGATGTTCAGGCTGATACTGAGACTTTCTTGAACAGGATTGTTCCTGAGgtatatc-tctatttggctggcttctcaatttactgatttggtgcttaagttgatcatttttgttgttgtggaatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37379268|gb|CF626373.1|CF626373
EST:     CTGATGTGCAGGCTGACACTGAGACTTTTCTTAACAGAATTGTTCCAGAG                         GGCCACAATGCTCCTTGGAAACACACTATGGAAG
genomic: CTGATGTGCAGGCTGACACTGAGACTTTTCTTAACAGAATTGTTCCAGAGgtcagtggcc ... tcgttttcagGGCCACAATGCTCCTTGGAAACACACTATGGAAG
EST: gi|211194336|gb|FL162075.1|FL162075
EST:     CTGATGTGCAGGCTGACACTGAGACTTTTCTTAACAGAATTGTTCCAGAG                         GGCCACAATGCTCCTTGGAAACACACTATGGAAG
genomic: CTGATGTGCAGGCTGACACTGAGACTTTTCTTAACAGAATTGTTCCAGAGgtcagtggcc ... tcgttttcagGGCCACAATGCTCCTTGGAAACACACTATGGAAG
EST: gi|211191945|gb|FL162071.1|FL162071
EST:     CTGATGTGCAGGCTGACACTGAGACTTTTCTTAACAGAATTGTTCCAGAG                         GGCCACAATGCTCCTTGGAAACACACTATGGAAG
genomic: CTGATGTGCAGGCTGACACTGAGACTTTTCTTAACAGAATTGTTCCAGAGgtcagtggcc ... tcgttttcagGGCCACAATGCTCCTTGGAAACACACTATGGAAG
EST: gi|16919476|gb|BM074210.1|BM074210
EST:     TTGATGTGCAGGCTGACACTGAGACTTTTCTTAACAGAATTGTTCCAGAG                         GGCCACAATGCTCCTTGGAAACACACTATGGAAG
genomic: CTGATGTGCAGGCTGACACTGAGACTTTTCTTAACAGAATTGTTCCAGAGgtcagtggcc ... tcgttttcagGGCCACAATGCTCCTTGGAAACACACTATGGAAG
EST: gi|84977403|gb|DW475825.1|DW475825
EST:     CTGATGTGCAGGCTGACACTGAGACTTTTCTTAACAGAATTGTTCCAGAG                         GGCCACAATGCTCCTTGGAAACACACTATGGAAG
genomic: CTGATGTGCAGGCTGACACTGAGACTTTTCTTAACAGAATTGTTCCAGAGgtcagtggcc ... tcgttttcagGGCCACAATGCTCCTTGGAAACACACTATGGAAG
EST: gi|14245643|gb|BG874225.1|BG874225
EST:     CTGATGTGCAGGCTGACACTGAGACTTTTCTTAACAGAATTGTTCCAGAG                         GGCCACAATGCTCCTTGGAAACACACTATGGAAG
genomic: CTGATGTGCAGGCTGACACTGAGACTTTTCTTAACAGAATTGTTCCAGAGgtcagtggcc ... tcgttttcagGGCCACAATGCTCCTTGGAAACACACTATGGAAG
EST: gi|37381219|gb|CF627481.1|CF627481
EST:     CTGATGTGCAGGCTGACACTGAGACTTTTCTTAACAGAATTGTTCCAGAG                         GGCCACAATGCTCCTTGGAAACACACTATGGAAG
genomic: CTGATGTGCAGGCTGACACTGAGACTTTTCTTAACAGAATTGTTCCAGAGgtcagtggcc ... tcgttttcagGGCCACAATGCTCCTTGGAAACACACTATGGAAG
EST: gi|211194338|gb|FL162077.1|FL162077
EST:     CTGATGTGCAGGCTGACACTGAGACTTTTCTTAACAGAATTGTTCCAGAG                         GGCCACAATGCTCCTTGGAAACACACTATGGAAG
genomic: CTGATGTGCAGGCTGACACTGAGACTTTTCTTAACAGAATTGTTCCAGAGgtcagtggcc ... tcgttttcagGGCCACAATGCTCCTTGGAAACACACTATGGAAG
EST: gi|211121910|gb|FL435147.1|FL435147
EST:     TGATGTGCAGGCTGACACTGAGACTTTTCTTAACCGAATTGTTCCAGAG                         GGCCACAATGCTCCTTTGGAAACACACTATGGAAG
genomic: TGATGTGCAGGCTGACACTGAGACTTTTCTTAACAGAATTGTTCCAGAGgtcagtggcc ... tcgttttcagGGCCACAATGCTCC-TTGGAAACACACTATGGAAG
EST: gi|211191948|gb|FL162074.1|FL162074
EST:     CTGATGTGCAGGCTGACACTGAGACTTTTCTTAACAGAATTGTTCCAGAG                         GGCCACAATGCTCCTTGGAAACACACTATGGAAG
genomic: CTGATGTGCAGGCTGACACTGAGACTTTTCTTAACAGAATTGTTCCAGAGgtcagtggcc ... tcgttttcagGGCCACAATGCTCCTTGGAAACACACTATGGAAG