1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TCCATGGCGGAGGAGGCGAGGGCGCGGTACGAGAAGGCCGTGTTCAAAGTGGTGGATCTGgtaattttgcatgatctacatctatatgcgtacgtgtgtgttctaagctagattgggctgccggctgtgctggagcttgagagatttctgggacgtgtgcag
species | Zea mays |
transcript | GRMZM2G086489_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGGAGGCGAGGGCGCGGTACGAGAAGGCCGTGTTCAAAGTGGTGGATCTG GATGACTATGCTCAGGAGGACGAGGAATACGAGGAGAAGCTGAAGAAGGAAEST: gi|22472411|gb|BU036891.1|BU036891
genomic: AGGAGGCGAGGGCGCGGTACGAGAAGGCCGTGTTCAAAGTGGTGGATCTGgtaattttgc ... acgtgtgcagGATGACTATGCTCAGGAGGACGAGGAATACGAGGAGAAGCTGAAGAAGGAA
EST: AGGAGGCGAGGGCGCGGTACGAGAAGGCCGTGTTCAAAGTGGTGGATCTG GATGACTATGCTCAGGAGGACGAGGAATACGAGGAGAAGCTGAAGAAGGAAEST: gi|148961269|gb|EE011991.2|EE011991
genomic: AGGAGGCGAGGGCGCGGTACGAGAAGGCCGTGTTCAAAGTGGTGGATCTGgtaattttgc ... acgtgtgcagGATGACTATGCTCAGGAGGACGAGGAATACGAGGAGAAGCTGAAGAAGGAA
EST: GGAGGCGAGGGCGCGGTACGAGAAGGCCCGTGTTCAAAGTGGTGGATCTG GATGACTATGCTCAGGAGGACGAGGAATACGAGGAGAAGCTGAAGAAGGAAEST: gi|26558402|gb|CA830637.1|CA830637
genomic: GGAGGCGAGGGCGCGGTACGAGAAGGCC-GTGTTCAAAGTGGTGGATCTGgtaattttgc ... acgtgtgcagGATGACTATGCTCAGGAGGACGAGGAATACGAGGAGAAGCTGAAGAAGGAA
EST: AGGAGGCGAGGGCGCGGTACGAGAAGGCCGTGTTCAAAGTGGTGGATCTG GATGACTATGCTCAGGAGGACGAGGAATACGAGGAGAAGCTGAAGAAGGAAEST: gi|22541992|gb|BU092430.1|BU092430
genomic: AGGAGGCGAGGGCGCGGTACGAGAAGGCCGTGTTCAAAGTGGTGGATCTGgtaattttgc ... acgtgtgcagGATGACTATGCTCAGGAGGACGAGGAATACGAGGAGAAGCTGAAGAAGGAA
EST: AGGAGGCGAGGGCGCGGTACGAGAAGGCCGTGTTCAAAGTGGTGGATCTG GATGACTATGCTCAGGAGGACGAGGAATACGAGGAGAAGCTGAAGAAGGAAEST: gi|211095653|gb|FK967022.1|FK967022
genomic: AGGAGGCGAGGGCGCGGTACGAGAAGGCCGTGTTCAAAGTGGTGGATCTGgtaattttgc ... acgtgtgcagGATGACTATGCTCAGGAGGACGAGGAATACGAGGAGAAGCTGAAGAAGGAA
EST: AGGAGGCGAGGGCGCGGTACGAGAAGGCCGTGTTCAAAGTGGTGGATCTG GATGACTATGCTCAGGAGGACGAGGAATACGAGGAGAAGCTGAAGAAGGAAEST: gi|211098118|gb|FK967027.1|FK967027
genomic: AGGAGGCGAGGGCGCGGTACGAGAAGGCCGTGTTCAAAGTGGTGGATCTGgtaattttgc ... acgtgtgcagGATGACTATGCTCAGGAGGACGAGGAATACGAGGAGAAGCTGAAGAAGGAA
EST: AGGAGGCGAGGGCGCGGTACGAGAAGGCCGTGTTCAAAGTGGTGGATCTG GATGACTATGCTCAGGAGGACGAGGAATACGAGGAGAAGCTGAAGAAGGAAEST: gi|148940766|gb|EC885587.2|EC885587
genomic: AGGAGGCGAGGGCGCGGTACGAGAAGGCCGTGTTCAAAGTGGTGGATCTGgtaattttgc ... acgtgtgcagGATGACTATGCTCAGGAGGACGAGGAATACGAGGAGAAGCTGAAGAAGGAA
EST: AGGAGGCGAGGGCGCGGTACGAGAAGGCCGTGTTCAAAGTGGTGGATCTG GATGACTATGCTCAGGAGGACGAGGAATACGAGGAGAAGCTGAAGAAGGAAEST: gi|148970820|gb|EE021584.2|EE021584
genomic: AGGAGGCGAGGGCGCGGTACGAGAAGGCCGTGTTCAAAGTGGTGGATCTGgtaattttgc ... acgtgtgcagGATGACTATGCTCAGGAGGACGAGGAATACGAGGAGAAGCTGAAGAAGGAA
EST: AGGAGGCGAGGGCGCGGTACGAGAAGGCCGTGTTCAAAGTGGTGGATCTG GATGACTATGCTCAGGAGGACGAGGAATACGAGGAGAAGCTGAAGAAGGAAEST: gi|19437265|gb|BM953675.1|BM953675
genomic: AGGAGGCGAGGGCGCGGTACGAGAAGGCCGTGTTCAAAGTGGTGGATCTGgtaattttgc ... acgtgtgcagGATGACTATGCTCAGGAGGACGAGGAATACGAGGAGAAGCTGAAGAAGGAA
EST: GGCGAGGGCGCGGTACGAGAAGGCCGTGTTCAAAGTGGTGGATCTG GATGACTATGCTCAGGAGGACGAGGAATACGAGGAGAAGCTGAAGAAGGAA
genomic: GGCGAGGGCGCGGTACGAGAAGGCCGTGTTCAAAGTGGTGGATCTGgtaattttgc ... acgtgtgcagGATGACTATGCTCAGGAGGACGAGGAATACGAGGAGAAGCTGAAGAAGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCATGGCGGAGGAGGCGAGGGCGCGGTACGAGAAGGCCGTGTTCAAAGTGGTGGATCTGgtaattttgcatgatctacatctatatgcgtacgtgtgtgttctaagctagattgggctgccggctgtgctggagcttgagagatttctgggacgtgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA