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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttcaattctatgaatttgttcacctcttcgataaacagtaattgccatggaatatgatgtcgttgccatgaaatgcatttcgtgttgagaatg...

Basic information

species Zea mays
transcript GRMZM2G070360_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G070360_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g46980.1 (Oryza sativa), 5'ss of exon 2
AATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttcaattctatgaatttgttcacctcttcgataaaca--gtaattgccatggaatatgatgtcgttgccatgaaatgcatttcgtgttgagaatg
| ||||| ||||||||||| || |||||||||||||||||||||||||| || ||||| |||||||| ||||||||||| || |||||  | |||||||||| ||||||| ||||    ||||  ||    | | |  |   |   |||    ||    || |  || || |    | ||  |      | |   |   |  
AGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATCAGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAATgtgagacttcgattcctcaaattatttatgttttcctgtgttctccgtatggtcccattaacagcatttcatgttgaggatttctgcagcatacagtaca--

upper sequence: GRMZM2G070360_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA08G02390.3 (Glycine max), 5'ss of exon 2
AATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttcaattctatgaatttgttcacctcttcgataaa-cagtaa--ttgccatggaatatgatgtcgttgccatgaaatgcatttcgtgttgagaatg
||||||| || |||||||||||| | |||||||| || || |||||||| || ||||| || ||||||||||||   || || ||| | || ||||| ||||||  ||||   | ||    | | | | | | ||   |    | || |  | |  ||  | || |   ||    || |  |   |  ||    || |     
AATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATCAGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaa--cttcctatataactctctatcctctttttttttgtctctgtgagttcgatattaactaggtcatctcgtccgttgacatcgattaaaattaaattc-

upper sequence: GRMZM2G070360_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA05G37160.1 (Glycine max), 5'ss of exon 2
AATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttca----attctatgaatttgttcacctcttcgataaacagtaattgccatggaatatgatgtcgttg-ccatgaaatgcatttcgtgttgagaatg
||||||| || |||||||||||| | || ||||| || || |||||||| || ||||| || ||||||||||||   || || ||| | || ||||| ||||||      |    | ||| |  | |  ||    | || | |       | ||   |   | |  | | |  | | || |  |   || ||    || |     
AATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATCAGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcctacataactctctatactcctttgtttttttgtttcttgtgagttcgaaattagttaggtcttctcgtccgttgatatcagttgaaattaa-----

upper sequence: GRMZM2G070360_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA08G02420.1 (Glycine max), 5'ss of exon 2
AATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttcaattctatgaatttgttcacctcttcgataaacagtaattgccatggaatatgatgtcgttgccatgaaatgcatttcgtgttgagaatg
||||||| || |||||||||||| | || ||||| ||||| |||||||  || |||||||| |||||||||||    || || ||| | || ||||| ||||||      |  |   |   | |  |||  | || | |      |   |    ||   |   |  | |||          |   || |   | ||    
AATTCAATATCGAGAAGCTGCAGTTAGTCGAAGCCGAGAAGAAGAAGACCAGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGATgtaacttcctacataactctctctactcagttttttggttttttttgtctcttgtgagttcgaaatttgttaggtcttctcgtcctttgatatcagttga

upper sequence: GRMZM2G070360_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA05G37190.1 (Glycine max), 5'ss of exon 2
AATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttca----attctatgaatttgttcacctcttcgataaacagtaattgccatggaatatgatgtcgttgccatgaaatgcatttcgtgttgagaatg
||||||| || |||||||||||| | || ||||| || || |||||||| || ||||| || ||||||||||||   || |||||| | || ||||| ||||||      |    | ||| |  | |  ||       ||      |   | | |  | |   | |  |  ||||| |||    || | ||    |   ||   
AATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATCAGGCAAGAATACGAACGCAAAGAGCGCCAAGTTGAAATTCGCAAGAAGATgtaacttcctacataactctctatactctttttttgtctctgagttcgaaattagttaggtcttctcgt-ccgttgacatcggttgaaattaaattctgga---

upper sequence: GRMZM2G070360_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA05G37150.1 (Glycine max), 5'ss of exon 2
AATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttcaattctatgaatttgttcacctcttcgataaacagtaattgccatggaatatgatgtcgttgccatgaaatgcatttcgtgttgagaatg-----
||||||| || |||||||||||| | || ||||| || || |||||||| || ||||| || ||||||||||||   || |||||| | || ||||| ||||||  ||||   | ||| | | | | ||| | ||   |   |  |         | |||| | |     | |       |  || ||  ||||| | |      
AATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATCAGGCAAGAATACGAACGCAAAGAGCGCCAAGTTGAAATTCGCAAGAAGATgtaa--cttc--ctttataactctctacacttttttttttgtctcttgcgagttcgaaataagttaggtcttctcgtccgttaatatca-gttgaaattaaattc

upper sequence: GRMZM2G070360_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 2
AATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttcaattctatgaatttgttcacctcttcgataaacagtaattgccatg-gaatatgatgtcgttgccatgaaatgcatttcgtgttgagaatg-
||||||||||||||||| |||||||||||||||| ||||| |||||||| ||||| || ||||| || ||||||||||| |||||  | ||||||||||||||| | | |    ||||| | ||| |   || |   ||     || ||  |  || ||  ||    | ||||  | |   |    |  |  ||    ||  
AATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATCAGACAGGAATATGAGCGAAAAGAGAAGCAAGTTGATATTCGGAAGAAAATgtaa-attactgaactatgtacttgatt-tctttggcatttttggtgatcacattgtgagaattggtttgttgttaagctctaagctatggatttctgatca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211441647|gb|FL403716.1|FL403716
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|60398792|gb|DN231608.1|DN231608
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|211298626|gb|FL380968.1|FL380968
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|9254375|gb|BE344843.1|BE344843
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|211533621|gb|FL412538.1|FL412538
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|93017021|gb|EB642541.1|EB642541
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|71440306|gb|DR821356.1|DR821356
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|91056063|gb|EB166481.1|EB166481
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|5895940|gb|AW037186.1|AW037186
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|76291539|gb|DV031107.1|DV031107
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|61118336|gb|DN559297.1|DN559297
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|211150220|gb|FL393279.1|FL393279
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|148979069|gb|EE026482.2|EE026482
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|78021201|gb|DV489588.1|DV489588
EST:     GAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: GAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|6020701|gb|AW065509.1|AW065509
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|78021681|gb|DV490068.1|DV490068
EST:     TGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: TGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|211210061|gb|FL412308.1|FL412308
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|211201727|gb|FL385153.1|FL385153
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|85153049|gb|DW587948.1|DW587948
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|22936000|gb|BU572275.1|BU572275
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|211317007|gb|FL374745.1|FL374745
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGCTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|211039940|gb|FL415155.1|FL415155
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|211309675|gb|FL422296.1|FL422296
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|6194518|gb|AW146622.1|AW146622
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|93017439|gb|EB642959.1|EB642959
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|211311559|gb|FL415806.1|FL415806
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|211348455|gb|FL392067.1|FL392067
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|211525021|gb|FL424291.1|FL424291
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|211332900|gb|FL428098.1|FL428098
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|116817248|gb|EC860065.1|EC860065
EST:     GACAAGAGTATGAACGCAAAGAGAAGCAGTGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: GACAAGAGTATGAACGCAAAGAGAAGCAG-GTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|211014107|gb|FL390333.1|FL390333
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|74235297|gb|DT643211.1|DT643211
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|88746236|gb|DY530377.1|DY530377
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGGTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|211311846|gb|FL427607.1|FL427607
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|211205212|gb|FL424415.1|FL424415
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|60353442|gb|DN220415.1|DN220415
EST:     GGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: GGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|71331382|gb|DR802528.1|DR802528
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|211348825|gb|FL411951.1|FL411951
EST:     GACAAGAGTATGAACGCAAAGAGANGCAGGTTGAAGTACGGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCA
genomic: GACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGG-AAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCA
EST: gi|149095115|gb|EE180726.2|EE180726
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|5871489|gb|AW017960.1|AW017960
EST:     AGACGAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|211315184|gb|FL384858.1|FL384858
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|6194534|gb|AW146638.1|AW146638
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATGAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|71440305|gb|DR821355.1|DR821355
EST:     ACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: ACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|94478080|gb|EB707038.1|EB707038
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|60358982|gb|DN225955.1|DN225955
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|148933452|gb|EC877146.2|EC877146
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|211054348|gb|FL401195.1|FL401195
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|211048985|gb|FL423000.1|FL423000
EST:     ACACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|6020714|gb|AW065522.1|AW065522
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|211199605|gb|FL408268.1|FL408268
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|211392867|gb|FL400605.1|FL400605
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|5343244|gb|AI795549.1|AI795549
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|211172984|gb|FL396044.1|FL396044
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|5439481|gb|AI820402.1|AI820402
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|211508535|gb|FL372233.1|FL372233
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|67017910|gb|CO446659.1|CO446659
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|5847170|gb|AW000249.1|AW000249
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|149077234|gb|EE165904.2|EE165904
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
EST: gi|91873822|gb|EB403779.1|EB403779
EST:     AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAAT                         TGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA
genomic: AGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 227

AATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCAGGATGATCTAGTAAACAAAATGAAAGACGATGCGATGAAGGAACTCCTC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 500

AATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCAGGATGATCTAGTAAACAAAATGAAAGACGATGCGATGAAGGAACTCCTC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 363

AATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCAGGATGATCTAGTAAACAAAATGAAAGACGATGCGATGAAGGAACTCCTC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 230

AATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttc ... tcgttaacagTGAGTACTCTATGCAGTTGAATGCTTCTCGCATCAAAGTTCTTCAAGCTCAGGATGATCTAGTAAACAAAATGAAAGACGATGCGATGAAGGAACTCCTC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttcaattctatgaatttgttcacctcttcgataaacagtaattgccatggaatatgatgtcgttgccatgaaatgcatttcgtgttgagaatg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaaca