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CATAATATCTGCAATTGAGTTTGACAAATCTGGGAATCATCTTGCTACTGGAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGATgtaagtgctacactatataagttctataatctttcttgcttaaatctcgtgtgcccatagtgctaatgtatgtgcag
species | Zea mays |
transcript | GRMZM2G069631_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGAT AATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCATEST: gi|91873992|gb|EB403949.1|EB403949
genomic: GAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGATgtaagtgcta ... gtatgtgcagAATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCAT
EST: GAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGAT AATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCATEST: gi|67012325|gb|CO441074.1|CO441074
genomic: GAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGATgtaagtgcta ... gtatgtgcagAATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCAT
EST: GAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGAT AATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCATEST: gi|60340196|gb|DN207169.1|DN207169
genomic: GAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGATgtaagtgcta ... gtatgtgcagAATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCAT
EST: GAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGAT AATGCTTGTCGAAGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCATEST: gi|148939774|gb|EC884472.2|EC884472
genomic: GAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGATgtaagtgcta ... gtatgtgcagAATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCAT
EST: GAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGAT AATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCATEST: gi|148991720|gb|EE033282.2|EE033282
genomic: GAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGATgtaagtgcta ... gtatgtgcagAATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCAT
EST: GAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGAT AATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCATEST: gi|94472892|gb|EB701850.1|EB701850
genomic: GAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGATgtaagtgcta ... gtatgtgcagAATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCAT
EST: GAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGAT AATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCAT
genomic: GAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGATgtaagtgcta ... gtatgtgcagAATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATAATATCTGCAATTGAGTTTGACAAATCTGGGAATCATCTTGCTACTGGAGATAGAGGTGGACGTGTGGTTTTGTTCGAAAGAACAGACATTGCTGATgtaagtgctacactatataagttctataatctttcttgcttaaatctcgtgtgcccatagtgctaatgtatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT