1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacattttgtaatgcatatcactgctttacatgttcatgtacagtaaagttaatgattaccttgactctttcag
species | Zea mays |
transcript | GRMZM2G067476_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|18172871|gb|BM348259.1|BM348259
genomic: ACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: GAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|18167113|gb|BM336952.1|BM336952
genomic: GAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: AATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|16926595|gb|BM079663.1|BM079663
genomic: AATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|17932024|gb|BM268984.1|BM268984
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|31357834|gb|CD442191.1|CD442191
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCGCACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|148973350|gb|EE024440.2|EE024440
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|18163508|gb|BM333347.1|BM333347
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|60400336|gb|DN233143.1|DN233143
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|18168234|gb|BM338074.1|BM338074
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|5108408|gb|AI740121.1|AI740121
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TGGAGAGAAATCGAAGCCATTGGAAAGGCTTGACCC TGGTGCCCCTGCTTCGCACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|50331163|gb|CO526289.1|CO526289
genomic: TGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|18649161|gb|BM497980.1|BM497980
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCGCACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|22819811|gb|BU499901.1|BU499901
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCGCACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|13381706|gb|BG458261.1|BG458261
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: GAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|18161892|gb|BM331731.1|BM331731
genomic: GAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|89249775|gb|DY621561.1|DY621561
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|18176508|gb|BM351441.1|BM351441
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|18172256|gb|BM347644.1|BM347644
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|18173129|gb|BM348517.1|BM348517
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: ATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|78081514|gb|DV509926.1|DV509926
genomic: ATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|28985718|gb|CB350781.1|CB350781
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAAAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|78081882|gb|DV510294.1|DV510294
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TGAGCTTGTCACTGGAGAGAAATTGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|16378806|gb|BI992621.1|BI992621
genomic: TGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|18168815|gb|BM338655.1|BM338655
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|18168659|gb|BM338499.1|BM338499
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|7135836|gb|AW498291.1|AW498291
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: GAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCGCACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|78025862|gb|DV494249.1|DV494249
genomic: GAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCGCACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|18649160|gb|BM497979.1|BM497979
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCGCACACATATGTCCTGGAGACCNAAACACAGGGCAGEST: gi|18167604|gb|BM337444.1|BM337444
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|18174386|gb|BM349774.1|BM349774
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|18164000|gb|BM333839.1|BM333839
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|18174175|gb|BM349563.1|BM349563
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|18171772|gb|BM341612.1|BM341612
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: AGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|18173140|gb|BM348528.1|BM348528
genomic: AGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|18172051|gb|BM347439.1|BM347439
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|17931731|gb|BM268691.1|BM268691
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|18162934|gb|BM332773.1|BM332773
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: ATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|17930674|gb|BM267634.1|BM267634
genomic: ATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: GCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|17930017|gb|BM266977.1|BM266977
genomic: GCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|110524573|gb|EE028757.1|EE028757
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|37391749|gb|CF633118.1|CF633118
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TATGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCGCACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|18163404|gb|BM333243.1|BM333243
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAGEST: gi|148963283|gb|EE014273.2|EE014273
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
EST: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC TGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
genomic: TTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacat ... actctttcagTGGTGCCACTGCTTCACACACATATGTCCTGGAGACCAAAACACAGGGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCCgtgagtacattttgtaatgcatatcactgctttacatgttcatgtacagtaaagttaatgattaccttgactctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA