1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GATTAACATCTTCATCGCGCTGCTCTGCAGCTGCATTGTCATCGGCCACTTGCTGGAAGGGAACCGATGGGTGAACGAGTCCATCACCGCGCTTGTCATGgtggggctctccggcctccgctctctcgcagtccgggtgtctgtggttttgcttctgtgggcactgctttgagtgttcttgtttcctgtatgtag
species | Zea mays |
transcript | GRMZM2G063492_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGCTGGAAGGGAACCGATGGGTGAACGAGTCCATCACCGCGCTTGTCATG GGCCTCATCACCGGAGGCGTCATCCTGCTGGTTACTAATGGGACAAACTCAEST: gi|211214877|gb|FK947155.1|FK947155
genomic: TGCTGGAAGGGAACCGATGGGTGAACGAGTCCATCACCGCGCTTGTCATGgtggggctct ... ctgtatgtagGGCCTCATCACCGGAGGCGTCATCCTGCTGGTTACTAATGGGACAAACTCA
EST: TGCTGGAAGGGAACCGATGGGTGAACGAGTCCATCACCGCGCTTGTCATG GGCCTCATCACCGGAGGCGTCATCCTGCTGGTTACTAATGGGACAAACTCAEST: gi|211214880|gb|FK947158.1|FK947158
genomic: TGCTGGAAGGGAACCGATGGGTGAACGAGTCCATCACCGCGCTTGTCATGgtggggctct ... ctgtatgtagGGCCTCATCACCGGAGGCGTCATCCTGCTGGTTACTAATGGGACAAACTCA
EST: GCTGGAAGGGAACCG-TGGGGTGAACGAGTCCATCACCGCGCTTGTCATG GGCCTCATCACCGGAG-CGTCATCCTGCTGGTTACTAATGGGACAAACTCAEST: gi|78078433|gb|DV506847.1|DV506847
genomic: GCTGGAAGGGAACCGATGGG-TGAACGAGTCCATCACCGCGCTTGTCATGgtggggctct ... ctgtatgtagGGCCTCATCACCGGAGGCGTCATCCTGCTGGTTACTAATGGGACAAACTCA
EST: TGCTGGAAGGGAACCGATGGGTGAACGAGTCCATCACCGCGCTTGTCATG GGCCTCATCACCGGAGGCGTCATCCTGCTGGTTACTAATGGGACAAACTCAEST: gi|71327380|gb|DR800303.1|DR800303
genomic: TGCTGGAAGGGAACCGATGGGTGAACGAGTCCATCACCGCGCTTGTCATGgtggggctct ... ctgtatgtagGGCCTCATCACCGGAGGCGTCATCCTGCTGGTTACTAATGGGACAAACTCA
EST: TGCTGGAAGGGAACCGATGGGTGAACGAGTCCATCACCGCGCTTGTCATG GGCCTCATCACCGGAGGCGTCATCCTGCTGGTTACTAATGGGACAAACTCAEST: gi|91872698|gb|EB402655.1|EB402655
genomic: TGCTGGAAGGGAACCGATGGGTGAACGAGTCCATCACCGCGCTTGTCATGgtggggctct ... ctgtatgtagGGCCTCATCACCGGAGGCGTCATCCTGCTGGTTACTAATGGGACAAACTCA
EST: TGCTGGAAGGGAACCGATGGGTGAACGAGTCCATCACCGCGCTTGTCATG GGCCTCATCACCGGAGGCGTCATCCTGCTGGTTACTAATGGGACAAACTCAEST: gi|211212317|gb|FK947152.1|FK947152
genomic: TGCTGGAAGGGAACCGATGGGTGAACGAGTCCATCACCGCGCTTGTCATGgtggggctct ... ctgtatgtagGGCCTCATCACCGGAGGCGTCATCCTGCTGGTTACTAATGGGACAAACTCA
EST: TGCTGGAGGGGAACCGATGGGTGAACGAGTCCATCACCGCGCTTGTCATG GGCCTCATCACCGGAGGCGTCATCCTGCTGGTTACTAATGGGACAAACTCAEST: gi|76915777|gb|DV166118.1|DV166118
genomic: TGCTGGAAGGGAACCGATGGGTGAACGAGTCCATCACCGCGCTTGTCATGgtggggctct ... ctgtatgtagGGCCTCATCACCGGAGGCGTCATCCTGCTGGTTACTAATGGGACAAACTCA
EST: TGCTGGAAGGGAACCGATGGGTGAACGAGTCCATCACCGCGCTTGTCATG GGCCTCATCACCGGAGGCGTCATCCTGCTGGTTACTAATGGGACAAACTCAEST: gi|78118702|gb|DV537086.1|DV537086
genomic: TGCTGGAAGGGAACCGATGGGTGAACGAGTCCATCACCGCGCTTGTCATGgtggggctct ... ctgtatgtagGGCCTCATCACCGGAGGCGTCATCCTGCTGGTTACTAATGGGACAAACTCA
EST: TGCTGGAAGGGAACCGATGGGTGAACGAGTCCATCACCGCGCTTGTCATG GGCCTCATCACCGGAGGCGTCATCCTGCTGGTTACTAATGGGACAAACTCAEST: gi|211212316|gb|FK947151.1|FK947151
genomic: TGCTGGAAGGGAACCGATGGGTGAACGAGTCCATCACCGCGCTTGTCATGgtggggctct ... ctgtatgtagGGCCTCATCACCGGAGGCGTCATCCTGCTGGTTACTAATGGGACAAACTCA
EST: TGCTGGAAGGGAACCGATGGGTGAACGAGTCCATCACCGCGCTTGTCATG GGCCTCATCACCGGAGGCGTCATCCTGCTGGTTACTAATGGGACAA
genomic: TGCTGGAAGGGAACCGATGGGTGAACGAGTCCATCACCGCGCTTGTCATGgtggggctct ... ctgtatgtagGGCCTCATCACCGGAGGCGTCATCCTGCTGGTTACTAATGGGACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTAACATCTTCATCGCGCTGCTCTGCAGCTGCATTGTCATCGGCCACTTGCTGGAAGGGAACCGATGGGTGAACGAGTCCATCACCGCGCTTGTCATGgtggggctctccggcctccgctctctcgcagtccgggtgtctgtggttttgcttctgtgggcactgctttgagtgttcttgtttcctgtatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG