1 5' 3' | 2 5' 3' | 3 5' 3' |
TGAATACATGGCCCCAGAAATTGTTCAGGGCCGAGGTCATGATAAGGCTGCAGACTGGTGGAGTGTGGGAGTCCTTCTTTTTGAAATGCTTACAGGAAAGgtgagtttttttttttttttgagctggaagtttctgactggacgtgttataggtacagaggagattttgtttatgtctcattacttgttcttttgccatgtatggcag
species | Zea mays |
transcript | GRMZM2G056355_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAGACTGGTGGAGTGTGGGAGTCCTTCTTTTTGAAATGCTTACAGGAAAG CCACCGTTTGTTGGTGGAAACAGAGACAAGATTCAGCAGAAGATAGTAAAGEST: gi|211350193|gb|FL470898.1|FL470898
genomic: CAGACTGGTGGAGTGTGGGAGTCCTTCTTTTTGAAATGCTTACAGGAAAGgtgagttttt ... tgtatggcagCCACCGTTTGTTGGTGGAAACAGAGACAAGATTCAGCAGAAGATAGTAAAG
EST: TTACAGGAAAG CCACCGTTTGTTGG-GGAAACAGAGACAAGATTCAGCAGAAGATAGTAAAGEST: gi|113691368|gb|DW850477.1|DW850477
genomic: TTACAGGAAAGgtgagttttt ... tgtatggcagCCACCGTTTGTTGGTGGAAACAGAGACAAGATTCAGCAGAAGATAGTAAAG
EST: GTGGGAGTCCTTCTTTTTGAAATGCTTACAGGAAAG CCACCGTTTGTTGGTGGAAACAGAGACAAGATTCAGCAGAAGATAGTAAAGEST: gi|211042389|gb|FL284656.1|FL284656
genomic: GTGGGAGTCCTTCTTTTTGAAATGCTTACAGGAAAGgtgagttttt ... tgtatggcagCCACCGTTTGTTGGTGGAAACAGAGACAAGATTCAGCAGAAGATAGTAAAG
EST: CAGACTGGTGGAGTGTGGGAGTCCTTCTTTTTGAAATGCTTACAGGAAAG CCACCGTTTGTTGGTGGAAACAGAGACAAGATTCAGCAGAAGATAGTAAAGEST: gi|60348805|gb|DN215778.1|DN215778
genomic: CAGACTGGTGGAGTGTGGGAGTCCTTCTTTTTGAAATGCTTACAGGAAAGgtgagttttt ... tgtatggcagCCACCGTTTGTTGGTGGAAACAGAGACAAGATTCAGCAGAAGATAGTAAAG
EST: CAGACTGGTGGAGTGTGGGAGTCCTTCTTTTTGAAATGCTTACAGGAAAG CCACCGTTTGTTGGTGGAAACAGAGACAAGATTCAGCAGAAGATAGTAAAGEST: gi|86466929|gb|DY233299.1|DY233299
genomic: CAGACTGGTGGAGTGTGGGAGTCCTTCTTTTTGAAATGCTTACAGGAAAGgtgagttttt ... tgtatggcagCCACCGTTTGTTGGTGGAAACAGAGACAAGATTCAGCAGAAGATAGTAAAG
EST: CAGACTGGTGGAGTGTGGGAGTCCTTCTTTTTGAAATGCTTACAGGAAAG CCACCGTTTGTTGGTGGTAACAGAGACAAGATTCAGCAGAAGATAGTAAAGEST: gi|148942871|gb|EC887913.2|EC887913
genomic: CAGACTGGTGGAGTGTGGGAGTCCTTCTTTTTGAAATGCTTACAGGAAAGgtgagttttt ... tgtatggcagCCACCGTTTGTTGGTGGAAACAGAGACAAGATTCAGCAGAAGATAGTAAAG
EST: GGAGTCCTTCTTTTTGAAATGCTTACAGGAAAG CCACCGTTTGTTGGTGGAAACAGAGACAAGATTCAGCAGAAGATAGTAAAGEST: gi|78107161|gb|DV525579.1|DV525579
genomic: GGAGTCCTTCTTTTTGAAATGCTTACAGGAAAGgtgagttttt ... tgtatggcagCCACCGTTTGTTGGTGGAAACAGAGACAAGATTCAGCAGAAGATAGTAAAG
EST: CAGACTGGTGGAGTGTGGGAGTCCTTCTTTTTGAAATGCTTACAGGAAAG CCACCGTTTGTTGGTGGAAACAGAGACAAGATTCAGCAGAAGATAGTAAAGEST: gi|86465903|gb|DY232276.1|DY232276
genomic: CAGACTGGTGGAGTGTGGGAGTCCTTCTTTTTGAAATGCTTACAGGAAAGgtgagttttt ... tgtatggcagCCACCGTTTGTTGGTGGAAACAGAGACAAGATTCAGCAGAAGATAGTAAAG
EST: CAGACTGGTGGAGTGTGGGAGTCCTTCTTTTTGAAATGCTTACAGGAAAG CCACCGTTTGTTGGTGGAAACAGAGACAAGATTCAGCAGAAGATAGTAAAGEST: gi|86470262|gb|DY236632.1|DY236632
genomic: CAGACTGGTGGAGTGTGGGAGTCCTTCTTTTTGAAATGCTTACAGGAAAGgtgagttttt ... tgtatggcagCCACCGTTTGTTGGTGGAAACAGAGACAAGATTCAGCAGAAGATAGTAAAG
EST: CAGACTGGTGGAGTGTGGGAGTCCTTCTTTTTGAAATGCTTACAGGAAAG CCACCGTTTGTTGGTGGAAACAGAGACAAGATTCAGCAGAAGATAGTAAAG
genomic: CAGACTGGTGGAGTGTGGGAGTCCTTCTTTTTGAAATGCTTACAGGAAAGgtgagttttt ... tgtatggcagCCACCGTTTGTTGGTGGAAACAGAGACAAGATTCAGCAGAAGATAGTAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAATACATGGCCCCAGAAATTGTTCAGGGCCGAGGTCATGATAAGGCTGCAGACTGGTGGAGTGTGGGAGTCCTTCTTTTTGAAATGCTTACAGGAAAGgtgagtttttttttttttttgagctggaagtttctgactggacgtgttataggtacagaggagattttgtttatgtctcattacttgttcttttgccatgtatggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG