Sequence
atgc intronic sequence ATGC exonic sequenceTTACTCTCTTCCTTTCTGTAAACCAAACACGATAGTTGACAGTGCAGAGAATCTTGGAGAAGTTCTGCGTGGTGATCGCATTGAGAACTCTCCTTATGTGgtcagtactagattactgcttgtcacatattcagcattgtaatttgtaatgtaccaaatcactgagtcgtcatgcactttgccgttttacgtttgtgttgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G046005_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA06G06460.1 (Glycine max), 5'ss of exon 2
TTACTCTCTTCCTTTCTGTAAACCAAACACGATAGTTGACAGTGCAGAGAATCTTGGAGAAGTTCTGCGTGGTGATCGCATTGAGAACTCTCCTTATGTGgtcagtactagattactgcttgtcacatattcagcattgtaatttgtaatgtaccaaatcactgagtcgtcatg-cactttgccgttttacgtttgtgttgtag--
||| || ||||| | |||| ||| | ||| || |||||||| |||||||| ||||| || |||||||| ||||||||||| |||| |||||||||||| || | | || | || || | |||| | |||| ||| | | || | ||| | || | |||| | | |
TTATTCACTTCCCTACTGTGCCCCATCAAAAATACAGGATAGTGCAGAAAATCTTGGGGAAGTACTTCGTGGTGACCGCATTGAGAATTCTCTCTATGTGgtcagtcttacttgtttactcttgtcagtttaatttttgtg----gcaatga--caagaaaggaattcttgatgatatattttcagtttaggaacaattaactgct
upper sequence: GRMZM2G046005_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA04G06420.1 (Glycine max), 5'ss of exon 2
TTACTCTCTTCCTTTCTGTAAACCAAACACGATAGTTGACAGTGCAGAGAATCTTGGAGAAGTTCTGCGTGGTGATCGCATTGAGAACTCTCCTTATGTGgtcagtactagattactgcttgtcacatattcagcattgtaatttgtaatgtaccaaatcactgagtcgtcatgcactttgccgttttacgtttgtgttgtag
||| || ||||| | ||| ||| | ||| || |||||||| |||||||| ||||| || |||||||| || ||||| || |||| |||||||||||| || || || | | | || | || | | | || | || | | || || | |
TTATTCACTTCCCTATTGTGCCCCATCAAAAATACAGGATAGTGCAGAAAATCTTGGGGAAGTACTTCGTGGTGACCGTATTGAAAATTCTCTCTATGTGgtcagt-cttacttgttgtctcttatcagtttaatttttgtgacaatgacaagaaaggaattctagatgatatattttcagtttaggaacaattaactgct--
upper sequence: GRMZM2G046005_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA02G36550.1 (Glycine max), 5'ss of exon 2
TTACTCTCTTCCTTTCTGTAAACCAAACACGATAGTTGACAGTGCAGAGAATCTTGGAGAAGTTCTGCGTGGTGATCGCATTGAGAACTCTCCTTATGTGgtcagtactagattactgcttgtcacatattcagcattgtaatttgt----aatgtaccaaatcactgagtcgtcatgcactttgccgttttacgtttgtgttgtag
|| || || |||| || ||||| || | ||||||||||| || || || |||||||| || || ||||||||||| |||||||| |||||||| || | || | || | | || | || | || | | | | | ||| | | ||| |||| |
CTATTCACTGCCTTATTGCCGGCCAAAACACATTTTCGACAGTGCAGAAAACCTGGGGGAAGTTCTCCGGGGAGATCGCATTGAAAACTCTCCCTATGTGgttggtttattaaatctttcggacaggt-tccaactttccaccttatgtttagtatgtttcactactaaaatattgaaacttttaaatttttccag-----------
upper sequence: GRMZM2G046005_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA17G08130.1 (Glycine max), 5'ss of exon 2
TTACTCTCTTCCTTTCTGTAAACC-AAACACGATAGTTGACAGTGCAGAGAATCTTGGAGAAGTTCTGCGTGGTGATCGCATTGAGAACTCTCCTTATGTGgtcagtactagattactgcttgtcacatattcagcattgtaatttgtaatgtaccaaatcactgagtcgtcatgcactttgccgttttacgtttgtgttgtag
|| || || |||| ||| || |||||| || ||||||||||||| ||||| || |||||||| || ||||| |||||||| |||||||| |||||||| || || || || | || | | |||| || || || || |||| | | | | | | | | | | |||| || | |
CTATTCACTGCCTTATTGTCGGCCTAAACAC-ATTTTTGACAGTGCAGAAAATCTAGGGGAAGTTCTCCGGGGTGACCGCATTGAAAACTCTCCCTATGTGgttggt-ttaaat--ctttcagacaggt-tccagctttctacctt-tagtgtattatgt--ttcactactaaaatattgaaacattttg-attcttccag---
upper sequence: GRMZM2G046005_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA06G28090.1 (Glycine max), 5'ss of exon 2
TTACTCTCTTCCTTTCTGTAAACCAAACACGATAGTTGACAGTGCAGAGAATCTTGGAGAAGTTCTGCGTGGTGATCGCATTGAGAACTCTCCTTATGTGgtcagtactagattactgcttgtcacatattcagcattgtaatttgtaatgtaccaaatcactgagtcgtcatg-cactttgccgttttacgtttgtgttgtag
|| || || |||| |||| | ||| || ||||||||||| ||||||||||| ||||| ||| | ||||| ||||| || ||||||||||| ||||| || || ||| ||| | |||| | || | | || | | ||| || | | || |||| || | |
CTATTCACTGCCTTACTGTCATCCAGGTCACATTGTTGACAGTGCTGAGAATCTTGGGGAAGTCCTGAGGGGTGACCGCATAGAAAACTCTCCTTACGTGgttggt--taaatttttgcat------cattcttctttcttccatttagtatgttcaattacaaaaatactaaaacagtttgattcttcaag------------
upper sequence: GRMZM2G046005_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA17G34020.1 (Glycine max), 5'ss of exon 2
TTACTCTCTTCCTTTCTGTAAACCAAACACGATAGTTGACAGTGCAGAGAATCTTGGAGAAGTTCTGCGTGGTGATCGCATTGAGAACTCTCCTTATGTGgtcagtactagattactgcttgtcacatattcagcattgtaatttgtaatgtaccaaatcactgagtcgtcatg-cactt-tgccgttttacgtttgtgttgtag
||| |||||||||| ||| |||||| | ||||| || ||||| || |||||||||||||| || ||||||||||||||||| || |||| ||||||||| || || || | || | | | |||| | || | | | | || ||| | | | || || | ||| |
TTATTCTCTTCCTTATTGTCCACCAAATAAAATAGTGGATAGTGCTGAAAATCTTGGAGAAGTGCTTCGTGGTGATCGCATTGAAAATTCTCGTTATGTGgtatgttttatatgaaatttt-----aattcttgtgttgttaattatgttatgctaatcaacttatttgctctgacatatatgcag-------------------
upper sequence: GRMZM2G046005_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA14G11780.1 (Glycine max), 5'ss of exon 2
TTACTCTCTTCCTTTCTGTAAACCAAACACGATAGTTGACAGTGCAGAGAATCTTGGAGAAGTTCTGCGTGGTGATCGCATTGAGAACTCTCCTTATGTGgtcagtactagattactgcttgtcacatattcagcattgtaatttgtaatgtaccaaatcactgagtc-gtcatgcactttgccgttttacgtttgtgttgtag
||| |||||||||| ||| |||||| | ||||| || ||||| || |||||||||||||| || ||||||||||||||||| || |||| ||||||||| || || || | || | | | || || | | |||||| | | | | || || | | | ||||| |
TTATTCTCTTCCTTATTGTCCACCAAATAAAATAGTGGATAGTGCTGAAAATCTTGGAGAAGTGCTTCGTGGTGATCGCATTGAAAATTCTCGTTATGTGgtatgttttatatgaaattttaattcttgccttgttaattatgttatggt-taccaacttatttactcagtgacgta-tttgcag-------------------
upper sequence: GRMZM2G046005_T02 (Zea mays), 5'ss of exon 2
lower sequence: AT2G24170.1 (Arabidopsis thaliana), 5'ss of exon 3
TTACTCTCTTCCTTTCTGTAAACCAAACACGATAGTTGACAGTGCAGAGAATCTTGGAGAAGTTCTGCGTGGTGATCGCATTGAGAACTCTCCTTATGTGgtcagtactagattactgcttgtcacatattcagcattgtaatttgtaatgtaccaaatcactgagtcgtcatgcactttgccgttttacgtttgtgttgtag
||| |||||||||| ||| ||| | || ||||| ||||| |||||||| || |||||||| ||||||||||| |||||||||||||||| |||||| || || | || || |||| | | || || || || | || | | ||||| || | | || | ||| | | ||||| ||
TTATTCTCTTCCTTATTGTCGTCCAGAACATATTGTTGATAGTGCTGAGAATCTCGGTGAAGTTCTTCGTGGTGATCGAATTGAGAACTCTCCTTTTGTGgtatgttcttg-tttcttcttggttctttctc--tatctgtcttggttaagtggtag-ttgttgagttgtttttaa---tgtctgtttgtttctttgttgcag
upper sequence: GRMZM2G046005_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv11s0037g00210.t01 (Vitis vinifera), 5'ss of exon 2
TTACTCTCTTCCTTTCTGTAAACCAAACACGATAGTTGACAGTGCAGAGAATCTTGGAGAAGTTCTGCGTGGTGATCGCATTGAGAACTCTCCTTATGTGgtcagtactagattactgcttgtcacatattcagcattgtaat-ttgtaatgtac-caaatcactgagtcgtcatgcactttgccgttttacgtttgtgttgtag
|| |||||||||| || ||| | || |||||||||||||||||||||||||| |||||||| || |||||||| ||||| |||||||||||||||||| || || | | | || | | || || || | |||| || | | | | | | | || | || |
CTATTCTCTTCCTTATTGCCGTCCAGAAACCATAGTTGACAGTGCAGAGAATCTTGGTGAAGTTCTTCGGGGTGATCGTATTGAAAACTCTCCTTATGTGgtctgttagagttcttaatactttagtgatcctcctttatatccttttcctgtatgcagtttattagtttctaacagaagctgtt-tgttgcag-----------
upper sequence: GRMZM2G046005_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv04s0008g06640.t01 (Vitis vinifera), 5'ss of exon 2
TTACTCTCTTCCTTTCTGTAAACCAAACACGATAGTTGACAGTGCAGAGAATCTTGGAGAAGTTCTGCGTGGTGATCGCATTGAGAACTCTCCTTATGTGgtcagtactagattactgcttgtc--acatattcagcattgtaatttgtaatgtaccaaatcactgagtcgtcatgcactttgccgttttacgtttgtgttgtag
|| ||||| |||| || ||| | || || |||| |||||||||||| || ||||| || ||||||||||| ||||| ||||| ||||||||||||||| || | ||||| | ||| || || || || | |||| ||| | ||| || || | | | | ||||| ||
CTATTCTCTGCCTTATTGCCGCCCAGGAAAAATTGTGGACAATGCAGAGAATCTCGGGGAAGTGCTTCGTGGTGATCGTATTGAAAACTCCCCTTATGTGgtcagttttaacatcttgcttttttgacaagttgagggctgc--ttgtttatgt---taataattgactc----------ttttagctgagtggatttgttgcag
upper sequence: GRMZM2G046005_T02 (Zea mays), 5'ss of exon 2
lower sequence: PP1S140_64V6.1 (Physcomitrella patens), 5'ss of exon 2
TTACTCTCTTCCTTTCTGTAAACCAAACAC---GATAGTTGACAGTGCAGAGAATCTTGGAGAAGTTCTGCGTGGTGATCGCATTGAGAACTCTCCTTATGTGgtcagta----ctagattactg-cttgtcacatattcagcattgtaat--ttgtaatgtaccaaatcactgagtcgtcatgcactttgccgttttacgtttgtgttgtag
||| ||| | ||| || |||| | ||| || ||||||| ||||| | ||||| ||||| || |||||||||||||||||||| ||||| || || ||| || | | |||| || || | || | | || | |||| | | | | | | | | | ||| ||| | |
---CTCGCTTGACTACTGCAAGCCAAGTTCAGGGATTGTGAACAGTGCCGAGAACTTGGGAGAGGTTCTTCGAGGTGATCGCATTGAGAACTCACCTTACGTTgtacgtaatctctgagccaaagtcttggtgcacataattcttttcagcaatgttagtataccccttgagttgaaggctttatattgtac-gttatacatct---------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211176452|gb|FL062315.1|FL062315EST: TTCTTGGAGAAGTTCTGCGTGGTGATCGCATTGAGAACTCTCCTTATGTG TTTGAGATGGGGGAACCCAAGATGTGCCAGATTATCTGCAAAGCAAAAATT
genomic: -TCTTGGAGAAGTTCTGCGTGGTGATCGCATTGAGAACTCTCCTTATGTGgtcagtacta ... tgtgttgtagTTTGAGATGGGGGAACCCAAGATGTGCCAGATTATCTGCAAAGCAAAAATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTACTCTCTTCCTTTCTGTAAACCAAACACGATAGTTGACAGTGCAGAGAATCTTGGAGAAGTTCTGCGTGGTGATCGCATTGAGAACTCTCCTTATGTGgtcagtactagattactgcttgtcacatattcagcattgtaatttgtaatgtaccaaatcactgagtcgtcatgcactttgccgttttacgtttgtgttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT