1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGATGGAAAGAGCTTCACATACAACAAAAGTATAAACATTGCTGTGGCAGTGGCCATAGATGGTGGGTTGATTACACCGGTTCTTCAAGATGCTGATAAGgtcaaacactttaccatgcacgatgaatgctgatttttgataattttttttaaaaataaatggttacctggtggtttatgcag
species | Zea mays |
transcript | GRMZM2G036534_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGATGGTGGGTTGATTACACCGATTCTTCAAGATGCTGATAAG CTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCGEST: gi|78106198|gb|DV524616.1|DV524616
genomic: AGATGGTGGGTTGATTACACCGGTTCTTCAAGATGCTGATAAGgtcaaacact ... gtttatgcagCTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCG
EST: TGGCCATAGATGGTGGGTTGATTACACCGGTTCTTCAAGATGCTGATAAG CTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCGEST: gi|23357491|gb|BU645140.1|BU645140
genomic: TGGCCATAGATGGTGGGTTGATTACACCGGTTCTTCAAGATGCTGATAAGgtcaaacact ... gtttatgcagCTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCG
EST: TGGCCATAGATGGTGGGTTGATTACACCGGTTCTTCAAGATGCTGATAAG CTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCGEST: gi|24768304|gb|CA403433.1|CA403433
genomic: TGGCCATAGATGGTGGGTTGATTACACCGGTTCTTCAAGATGCTGATAAGgtcaaacact ... gtttatgcagCTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCG
EST: TGGCCATAGATGGTGGGTTGATTACACCGATTCTTCAAGATGCTGATAAG CTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCGEST: gi|211440164|gb|FL434174.1|FL434174
genomic: TGGCCATAGATGGTGGGTTGATTACACCGGTTCTTCAAGATGCTGATAAGgtcaaacact ... gtttatgcagCTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCG
EST: GTTCTTCAAGATGCTGATAAG CTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCGEST: gi|6022391|gb|AW067319.1|AW067319
genomic: GTTCTTCAAGATGCTGATAAGgtcaaacact ... gtttatgcagCTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCG
EST: TGGCCATAGATGGTGGGTTGATTACNCCGGTTCTTCAAGATGCTGATAAG CTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCGEST: gi|71765103|gb|DR963040.1|DR963040
genomic: TGGCCATAGATGGTGGGTTGATTACACCGGTTCTTCAAGATGCTGATAAGgtcaaacact ... gtttatgcagCTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCG
EST: TGGCCATAGATGGTGGGTTGATTACACCGGTTCTTCAAGATGCTGATAAG CTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCGEST: gi|78088435|gb|DV516828.1|DV516828
genomic: TGGCCATAGATGGTGGGTTGATTACACCGGTTCTTCAAGATGCTGATAAGgtcaaacact ... gtttatgcagCTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCG
EST: TGGCCATAGATGGTGGGTTGATTACACCGGTTCTTCAAGATGCTGATAAG CTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCGEST: gi|149027250|gb|EE046447.2|EE046447
genomic: TGGCCATAGATGGTGGGTTGATTACACCGGTTCTTCAAGATGCTGATAAGgtcaaacact ... gtttatgcagCTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCG
EST: TGGCCATAGATGGTGGGTTGATTACACCGGTTCTTCAAGATGCTGATAAG CTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCGEST: gi|93013412|gb|EB638932.1|EB638932
genomic: TGGCCATAGATGGTGGGTTGATTACACCGGTTCTTCAAGATGCTGATAAGgtcaaacact ... gtttatgcagCTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCG
EST: TGGCCATAGATGGTGGGTTGATTACACCGGTTCTTCAAGATGCTGATAAG CTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCGEST: gi|71444183|gb|DR825233.1|DR825233
genomic: TGGCCATAGATGGTGGGTTGATTACACCGGTTCTTCAAGATGCTGATAAGgtcaaacact ... gtttatgcagCTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCG
EST: TGGCCATAGATGGTGGGTTGATTACACCGGTTCTTCAAGATGCTGATAAG CTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCGEST: gi|93284411|gb|EB676675.1|EB676675
genomic: TGGCCATAGATGGTGGGTTGATTACACCGGTTCTTCAAGATGCTGATAAGgtcaaacact ... gtttatgcagCTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCG
EST: TGGCCATAGATGGTGGGTTGATTACACCGGTTCTTCAAGATGCTGATAAG CTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCGEST: gi|74246257|gb|DT654171.1|DT654171
genomic: TGGCCATAGATGGTGGGTTGATTACACCGGTTCTTCAAGATGCTGATAAGgtcaaacact ... gtttatgcagCTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCG
EST: TGGCCATAGATGGTGGGTTGATTACACCGGTTCTTCAAGATGCTGATAAG CTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCGEST: gi|78074314|gb|DV502748.1|DV502748
genomic: TGGCCATAGATGGTGGGTTGATTACACCGGTTCTTCAAGATGCTGATAAGgtcaaacact ... gtttatgcagCTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCG
EST: TGGCCATAGATGGTGGGTTGATTACACCGGTTCTTCAAGATGCTGATAAG CTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCGEST: gi|71759734|gb|DR957671.1|DR957671
genomic: TGGCCATAGATGGTGGGTTGATTACACCGGTTCTTCAAGATGCTGATAAGgtcaaacact ... gtttatgcagCTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCG
EST: GCCCATAGATGGTGGGTTGATTACACCGGTT-TTCAAAGATGCTGATAAG CTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCGEST: gi|74236968|gb|DT644882.1|DT644882
genomic: GGCCATAGATGGTGGGTTGATTACACCGGTTCTTC-AAGATGCTGATAAGgtcaaacact ... gtttatgcagCTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCG
EST: TGGCCATAGATGGTGGGTTGATTACACCGGTTCTTCAAGATGCTGATAAG CTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCGEST: gi|31353134|gb|CD437491.1|CD437491
genomic: TGGCCATAGATGGTGGGTTGATTACACCGGTTCTTCAAGATGCTGATAAGgtcaaacact ... gtttatgcagCTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCG
EST: TGGCCATAGATGGTGGGTTGATTACACCGATTCTTCAAGATGCTGATAAG CTTGACATTTATTCATT
genomic: TGGCCATAGATGGTGGGTTGATTACACCGGTTCTTCAAGATGCTGATAAGgtcaaacact ... gtttatgcagCTTGACATTTATTCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATGGAAAGAGCTTCACATACAACAAAAGTATAAACATTGCTGTGGCAGTGGCCATAGATGGTGGGTTGATTACACCGGTTCTTCAAGATGCTGATAAGgtcaaacactttaccatgcacgatgaatgctgatttttgataattttttttaaaaataaatggttacctggtggtttatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT