1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCTGAACTCATGGCTCGCGTCTACGTTGGGAACCTGGATCCGCGTGTCACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAGgtgagatgcggtgcctttgctcggaagtgctcagctttgtttttttattgatagcagtagcgcgaatgtagtttttctatgatttcccctgacttgcctc...
species | Zea mays |
transcript | GRMZM2G027105_T04 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAG TGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGAEST: gi|15188227|gb|BI417204.1|BI417204
genomic: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAGgtgagatgcg ... ttccatgcagTGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGA
EST: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAG TGTATGGGTTGCTAGGAAACCACCAGGGTTTGTCTTCATTGACTTTGATGAEST: gi|149082345|gb|EE171527.2|EE171527
genomic: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAGgtgagatgcg ... ttccatgcagTGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGA
EST: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAG TGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGAEST: gi|21331667|gb|BQ487048.1|BQ487048
genomic: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAGgtgagatgcg ... ttccatgcagTGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGA
EST: ACGGCGCGGGAGATCGAGGACGAGTTCCGGACGTTTGGGGTTCTGAGGAG TGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGAEST: gi|22489522|gb|BU049445.1|BU049445
genomic: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAGgtgagatgcg ... ttccatgcagTGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGA
EST: GGGTTCTGAGGAG TGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGAEST: gi|18384821|gb|BM418020.1|BM418020
genomic: GGGTTCTGAGGAGgtgagatgcg ... ttccatgcagTGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGA
EST: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAG TGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGAEST: gi|71438201|gb|DR819251.1|DR819251
genomic: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAGgtgagatgcg ... ttccatgcagTGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGA
EST: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAG TGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGAEST: gi|22489415|gb|BU049338.1|BU049338
genomic: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAGgtgagatgcg ... ttccatgcagTGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGA
EST: CGGATGTTTGGGGTTCTGAGGAG TGTATGGGTTGCTAGGAANCCNCCAGGGTTTGCCTTCATTGNCTTTGATGNEST: gi|15323604|gb|BI478888.1|BI478888
genomic: CGGATGTTTGGGGTTCTGAGGAGgtgagatgcg ... ttccatgcagTGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGA
EST: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAG TGTATGGGTTGCTAGGAEST: gi|15177619|gb|BI398558.1|BI398558
genomic: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAGgtgagatgcg ... ttccatgcagTGTATGGGTTGCTAGGA
EST: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAG TGTATGGGTTGCTAGGAAACCACCAGGGTTTGTCTTTATTGACTTTGATGAEST: gi|18053132|gb|BM318790.1|BM318790
genomic: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAGgtgagatgcg ... ttccatgcagTGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGA
EST: GAGTTCCGGATGTTTGGGGTTCTGAGGAG TGTATGGGTTGCTAGGAAACCACCAGGGGTTTGCCTTCATTGACTTTGATGEST: gi|37426342|gb|CF650923.1|CF650923
genomic: GAGTTCCGGATGTTTGGGGTTCTGAGGAGgtgagatgcg ... ttccatgcagTGTATGGGTTGCTAGGAAACCACCA-GGGTTTGCCTTCATTGACTTTGATG
EST: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAG TGTATGGGTTGCTACGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGAEST: gi|71449212|gb|DR830262.1|DR830262
genomic: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAGgtgagatgcg ... ttccatgcagTGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGA
EST: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAG TGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGAEST: gi|17970002|gb|BM276770.1|BM276770
genomic: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAGgtgagatgcg ... ttccatgcagTGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGA
EST: GGACGAGTTCCGGATGTTTGGGGTTCTGAGGAG TGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGAEST: gi|18384819|gb|BM418018.1|BM418018
genomic: GGACGAGTTCCGGATGTTTGGGGTTCTGAGGAGgtgagatgcg ... ttccatgcagTGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGA
EST: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAG TGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGAEST: gi|87298765|gb|DY470768.1|DY470768
genomic: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAGgtgagatgcg ... ttccatgcagTGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGA
EST: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAG TGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGAEST: gi|71317875|gb|DR795704.1|DR795704
genomic: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAGgtgagatgcg ... ttccatgcagTGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGA
EST: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAG TGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGAEST: gi|18384989|gb|BM418188.1|BM418188
genomic: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAGgtgagatgcg ... ttccatgcagTGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGA
EST: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAG TGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGAEST: gi|15188220|gb|BI417197.1|BI417197
genomic: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAGgtgagatgcg ... ttccatgcagTGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGA
EST: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAG TGTATGGGTTGCTAGGAAACCACCAGGGTTTGTCTTTATTGACTTTGATGAEST: gi|50333998|gb|CO529124.1|CO529124
genomic: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAGgtgagatgcg ... ttccatgcagTGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGA
EST: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAG TGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGAEST: gi|18384820|gb|BM418019.1|BM418019
genomic: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAGgtgagatgcg ... ttccatgcagTGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGA
EST: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAG TGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGAEST: gi|13557662|gb|BG549018.1|BG549018
genomic: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAGgtgagatgcg ... ttccatgcagTGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGA
EST: GGTCGCGGGTAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAG TGTATGGGTTGCTAGGAAACCACCAGGGEST: gi|22489184|gb|BU049107.1|BU049107
genomic: GG-CGCGGG-AGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAGgtgagatgcg ... ttccatgcagTGTATGGGTTGCTAGGAAACCACCAGGG
EST: CGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAG TGTATGGGTTGCTAGGAAACCACCAGGGNTTTGCCTTCATTGACTTTGATGEST: gi|71438000|gb|DR819050.1|DR819050
genomic: CGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAGgtgagatgcg ... ttccatgcagTGTATGGGTTGCTAGGAAACCACCAGGG-TTTGCCTTCATTGACTTTGATG
EST: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAG TGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGAEST: gi|15313695|gb|BI478910.1|BI478910
genomic: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAGgtgagatgcg ... ttccatgcagTGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGA
EST: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAG TGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGAEST: gi|18384999|gb|BM418198.1|BM418198
genomic: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAGgtgagatgcg ... ttccatgcagTGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGA
EST: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAG TGTATGGGTTGCTAGGAAACCACCAGGGTTTGTCTTCATTGACTTTGATGA
genomic: ACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAGgtgagatgcg ... ttccatgcagTGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGAACTCATGGCTCGCGTCTACGTTGGGAACCTGGATCCGCGTGTCACGGCGCGGGAGATCGAGGACGAGTTCCGGATGTTTGGGGTTCTGAGGAGgtgagatgcggtgcctttgctcggaagtgctcagctttgtttttttattgatagcagtagcgcgaatgtagtttttctatgatttcccctgacttgcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG