ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

TGAGAAGGGCATTGGTGATGGAACTGTGAGCTATGGGATGGACGATGCTGATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctacagaaatacccataactagatacataatgcatttgttttgttattctcaaacctgagatgtttcactgcatttttcgcag

Basic information

species	Zea mays
transcript	GRMZM2G022859_T01
intron #	2
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G022859_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g50440.1 (Oryza sativa), 5'ss of exon 2

TGAGAAGGGCATTGGTGATGGAACTGTGAGCTATGGGATGGACGATGCTGATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctacagaaatacccataactagatacataatgcatttgttttgttattctcaaacctga-gatgtttcac-tgcatttt---tcgcag
||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||||| |||||| ||||||||||||||||||||||| ||||| || ||||| |  | ||  |||||| | ||||||   | |||||||| ||   ||| |||||||   | ||| ||| || | || |||   | ||||
TGAGAAGGGCATTGGTGATGGGACAGTGAGCTATGGAATGGATGATGCTGATGACATATATATGCGTTCCTGGACAGGAACTATCATTGGCCCTCCTAATgtatgttgtataa-cacccattagtagatattaactgcatttgcttctgtatgctcaaactgaatgatcttttacattcaatttgtcttgcag

upper sequence: GRMZM2G022859_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA07G24950.4 (Glycine max), 5'ss of exon 2

TGAGAAGGGCATTGGTGATGGAACTGTGAGCTATGGGATGGACGATGCTGATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctacaga--aatacccataact-----agatacataatgcatttgttttgttattctcaaacctgagatgtttcactgcatttttcgcag-----
||||||||| ||||| ||||||||||| |||||||| ||||| ||||||||||||||||  ||||  || ||||| || |||||||| ||||| || |  ||| | | | |     ||    | ||        || |  |    |  |   |  ||  |   |   |  ||    |    || ||||      |     
TGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTgtaagttgctgtctgttatttttgacacattggaatccccagctaacatccctatttgcttctatgacaaagtaaatattttgaatttcagtgggggctt

upper sequence: GRMZM2G022859_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA08G04710.1 (Glycine max), 5'ss of exon 2

TGAGAAGGGCATTGGTGATGGAACTGTGAGCTATGGGATGGACGATGCTGATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctacagaaatacccataacta----gataca-taatgcatttgttttgttattctcaaacctgagatgtttcactgcatttttcgcag--------
||||||||| ||||| ||||||||||| ||||| || ||||| ||||||||||| || |  |||| ||||||||| || ||||| ||||| || ||    ||| |||       |      |   |    | |||| | ||    |  ||     |||    ||| |   || ||| |  | | |||  |           
TGAGAAGGGAATTGGAGATGGAACTGTTAGCTACGGAATGGATGATGCTGATGATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGTgtaagcttttctgttctttggagaaattctgttacaatgataacatctttgcaaaattgcagaacttattat-ttttatagaaatttaagagtctacggct

upper sequence: GRMZM2G022859_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA05G35000.1 (Glycine max), 5'ss of exon 2

TGAGAAGGGCATTGGTGATGGAACTGTGAGCTATGGGATGGACGATGCTGATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctacagaaatacccataacta----gatac-ataatgcatttgttttgttattctcaaacctgagatgtttcactgcatttttcgcag--------
||||||||| ||||| ||||||||||| |||||||| ||||| ||||||||||| || |  |||| ||||||||| || ||||| ||||| || ||    ||| |||       |      ||  |    | ||| || |     |  ||     ||| |  ||| |   || ||| |  | | |||  |           
TGAGAAGGGAATTGGAGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGTgtaagctgtcctgttctttggaaaaattgtgttactatgaaaacctctttgcaaaattgtagaacttactat-ttttatagaaatttatgagttttatcaa

upper sequence: GRMZM2G022859_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA09G22600.1 (Glycine max), 5'ss of exon 2

TGAGAAGGGCATTGGTGATGGAACTGTGAGCTATGGGATGGACGATGCTGATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctacaga--aatacccataactagatacataatgcatttgtttt-gttattctcaaacc--tgagatgtttcactg-catttttcgcag------
||||||||| ||||| ||||||||||| |||||||| ||||| || ||||| |||||||  ||||  || ||||| || ||||||||||| || ||    ||| ||| |       |   |  || ||   |  || |    || | || |||||| |  |  |  ||  || |    ||  |||   |  |||      
TGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGACGCTGACGACATATACATGCAATCTTGGACTGGGACTATCATTGGGCCCCCTGGTgtaagctgctctctgcttttctgaaataataatttatttttcttttattagttatttttgacacattggaatctccagctaacatccctatcagcttcta

upper sequence: GRMZM2G022859_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT1G23260.1 (Arabidopsis thaliana), 5'ss of exon 2

TGAGAAGGGCATTGGTGATGGAACTGTGAGCTATGGGATGGACGATGCTGATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctacagaaatacccataact-agatacataatgcatttgttttgttattctcaaacctgagatgt--ttcactgcatttttcgcag-----------
|||||| || ||||| ||||| ||||| |||||||| ||||| ||||||||||| || | |||||  || ||||| || || ||  |||||||||| || ||||| ||      || | ||  || || |   |  |  |||| | | ||  ||   | |    |||||   ||     || ||||   ||           
TGAGAAAGGTATTGGAGATGGTACTGTTAGCTATGGAATGGATGATGCTGATGATATTTATATGCAATCTTGGACTGGCACCATTCTTGGTCCTCCTAATgtatg-tatctctctatcgatctctgagttttgttttagatttatct-gtgtttgatagagtaaagatgcaatttttaacacttttgtgagagaattgttgg

upper sequence: GRMZM2G022859_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv01s0011g05630.t01 (Vitis vinifera), 5'ss of exon 2

TGAGAAGGGCATTGGTGATGGAACTGTGAGCTATGGGATGGACGATGCTGATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctacagaaatacc-cataacta--gatacataatgcatttgttttg---ttattctcaaacctgagatgtttca---ctgcatttttcgcag----
 || ||||| ||||| ||||||||||| || ||||| ||||| ||||||||||| ||||  |||| ||| ||||| || ||||||||||||||||| || ||  | |       |  | || || |      | |||||| | |  ||      | | ||||  | || |||||||       |   |  || | |     
GGAAAAGGGAATTGGCGATGGAACTGTCAGTTATGGAATGGATGATGCTGATGATATATACATGCAGTCGTGGACTGGGACTATCATTGGTCCTCCTAATgtgagttttttctttttcacacaattttcatgatataatgaactccttacaggttgaatctctcaact-agatgttaagaatttatgtggttggtattatc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|71423683|gb|DR806127.1|DR806127

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|211292706|gb|FL181550.1|FL181550

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAN
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|211292704|gb|FL181548.1|FL181548

EST:     ATGACATATTTATGCGGTCCTAGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|14243209|gb|BG840922.2|BG840922

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|60345888|gb|DN212861.1|DN212861

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|88754530|gb|DY538671.1|DY538671

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|211187611|gb|FL186089.1|FL186089

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|33100243|gb|CF060203.1|CF060203

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|211292709|gb|FL181553.1|FL181553

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|211292700|gb|FL181544.1|FL181544

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|60337925|gb|DN204898.1|DN204898

EST:     GGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: GGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|211292707|gb|FL181551.1|FL181551

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|71423686|gb|DR806128.1|DR806128

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|13389074|gb|BG462543.1|BG462543

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|211290575|gb|FL181543.1|FL181543

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACT-TYNACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|32797911|gb|CD950147.1|CD950147

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCGGTTA
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTA

EST: gi|211187618|gb|FL186096.1|FL186096

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|13389071|gb|BG462542.1|BG462542

EST:     AGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: AGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|76016546|gb|DT943716.1|DT943716

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|211292705|gb|FL181549.1|FL181549

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|211290573|gb|FL181541.1|FL181541

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTNCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|211292703|gb|FL181547.1|FL181547

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|211292708|gb|FL181552.1|FL181552

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTAT

EST: gi|16379365|gb|BI992896.1|BI992896

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|211292701|gb|FL181545.1|FL181545

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|76913969|gb|DV165351.1|DV165351

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|211343001|gb|FL470860.1|FL470860

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|32800774|gb|CD953010.1|CD953010

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCAGTTA
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTA

EST: gi|60350937|gb|DN217910.1|DN217910

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|14242746|gb|BG840531.2|BG840531

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|211241891|gb|FL451480.1|FL451480

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACAAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|211185218|gb|FL186081.1|FL186081

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|211185222|gb|FL186085.1|FL186085

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|60351107|gb|DN218080.1|DN218080

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|60350383|gb|DN217356.1|DN217356

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

EST: gi|211292710|gb|FL181554.1|FL181554

EST:     ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAAC                         ACTGTTCACAAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT
genomic: ATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGAT

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 285

TGAGAAGGGCATTGGTGATGGAACTGTGAGCTATGGGATGGACGATGCTGATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctaca ... tttttcgcagACTGTTCACGAGGGACGAATCTATCAGTTAAAGCTGTTTTGTGATACAGATTATCCAGATAAACCACCGACTGTCCGATTCCAGACTCGGATCAATATGA

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 268

Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 214