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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAGGTTGGCGTCAGGCAGTTCAAGCTCATCCCCAACAGGAGCTTGCCGGCGCCGATCGCCGGCTCCCCTCTCCACCAGAAGGGCCTCTTCTTCACTAGgtgacttttagttcgttcgttttcctctacgcatttggatccacgagcaggtgcgccacatagcattgcgatctcgtcag

Basic information

species Zea mays
transcript GRMZM2G018612_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018612_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g36920.1 (Oryza sativa), 5'ss of exon 2
GGGAGGTTGGCGTCAGGCAGTTCAAGCTCATCCCCAACAGGAGCTTGCCGGCGCCGATCGCCGGCTCCCCTCTCCACCAGAAGGGCCTCTTCTTCACTAGgtgacttttagttcgttcgttttcctctacgcatttggatccacgagcaggtgcgccacatagcattgcgatct--cgtcag------------------
 |||||| ||  |||||||||| |||  |||| | ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |     |      |          |  | |  || | |    |     |    |  ||||  ||   ||    ||  |                   
AGGAGGTCGGGATCAGGCAGTTTAAGAGCATCGCAAACCGGAGCTTGCCGGCGCCTATCGCCGGCTCCCCTCTCCACCAGAAGGGCCTCTTCTTCACAAGgtcataacaaaaaaaattaaaaattaatctgtaggtgaaacttttatatatttattcgtatagacttaaaattcaacgctaaaaagaaattacgttgaaa

upper sequence: GRMZM2G018612_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv04s0008g01100.t01 (Vitis vinifera), 5'ss of exon 2
GGGAGGTTGGCGTCAGGCAGTTCAAGCTCATCCCCAACAGGAGCTTGCCGGCGCCGATCGCCGGCTCCCCTCTCCACCAGAAGGGCCTCTTCTTCACTAGgtgacttttagttcgttcgttttcctctacgcatttggatccacgagcaggt---gcgccacatagcattgcgatctcgtcag-------------------------------------------------------------------------------------------------------
| || |||||  | | | | |||||   ||| |||||||| ||| | ||  |  | ||| | |  |||||||||||||| ||||| ||||||||||| ||||   | |   |  ||   | | | |  |  |||  |  |  | ||    ||     |||| || | ||     |   || ||                                                                                                       
GAGAAGTTGGAATAAAGAAATTCAAAGACATTCCCAACAGAAGCATTCCCTCTGCCATCTCAGCATCCCCTCTCCACCAAAAGGGTCTCTTCTTCACCAGgtatttctccatatgt--atctccataaatacata-gactataagaatgagttagatgccatat-gtatctgacttgagtgagccaacaatctataccaagctaaaaagaagaaagccagcagattttaaattcaagtgagttgatttaaagtgatcagtatatctgatgaaagttggctttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148960863|gb|EE011540.2|EE011540
EST:     GCGCCGATCGCCGGCTCCCCTCTCCACCAGAAGGGCCTCTTCTTCACTAG                         GGATGAACGGTGGTCGGCGATGAGGAATACAATCATCTCGCTGTACCAGCC
genomic: GCGCCGATCGCCGGCTCCCCTCTCCACCAGAAGGGCCTCTTCTTCACTAGgtgactttta ... atctcgtcagGGATGAACGGTGGTCGGCGATGAGGAATACAATCATCTCGCTGTACCAGCC