1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCCTCCCAAGGGACCTCTTCCTCGACCTCGTCCTCGACGCCCTCGCCCTCTACAAGTACGTTGCCCCCAACCAGCGCGCCGATCTCATGCTCGCCTGCAGgtccgtccgccacacctttcctgccctcctctcttctgccactgcaattcaagatttcctcattttgctgagaaaataattgaaaaattccctcattttg...
species | Zea mays |
transcript | GRMZM2G017334_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TACAAGTACGTTGCCCCCAACCAGCGCGCCGATCTCATGCTCGCCTGCAG GATTCGTGAACGAAAGGAATCTATCACGGTTCTTCTTTGTGGAACTAGTGGEST: gi|31355922|gb|CD440279.1|CD440279
genomic: TACAAGTACGTTGCCCCCAACCAGCGCGCCGATCTCATGCTCGCCTGCAGgtccgtccgc ... cttgccttagGATTCGTGAACGAAAGGAATCTATCACGGTTCTTCTTTGTGGAACTAGTGG
EST: TACAAGTACGTTGCCCCCAACCAGCGCGCCGATCTCATGCTCGCCTGCAG GATTCGTGAACGAAAGGAATCTATCACGGTTCTTCTTTGTGGAACTAGTGGEST: gi|71444659|gb|DR825709.1|DR825709
genomic: TACAAGTACGTTGCCCCCAACCAGCGCGCCGATCTCATGCTCGCCTGCAGgtccgtccgc ... cttgccttagGATTCGTGAACGAAAGGAATCTATCACGGTTCTTCTTTGTGGAACTAGTGG
EST: TACAAGTACGTTGCCCCCAACCAGCGCGCCGATCTCATGCTCGCCTGCAG GATTCGTGAACGAAAGGAATCTATCACGGTTCTTCTTTGTGGAACTAGTGGEST: gi|74245291|gb|DT653205.1|DT653205
genomic: TACAAGTACGTTGCCCCCAACCAGCGCGCCGATCTCATGCTCGCCTGCAGgtccgtccgc ... cttgccttagGATTCGTGAACGAAAGGAATCTATCACGGTTCTTCTTTGTGGAACTAGTGG
EST: TATAAGTACGTTGCCCCCAACCAGCGCGCCGATCTCATGCTCGCCTGCAG GATTCGTGAACGAAAGGAATCTATCACGGTTCTTCTTTGTGGAACTAGTGG
genomic: TACAAGTACGTTGCCCCCAACCAGCGCGCCGATCTCATGCTCGCCTGCAGgtccgtccgc ... cttgccttagGATTCGTGAACGAAAGGAATCTATCACGGTTCTTCTTTGTGGAACTAGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTCCCAAGGGACCTCTTCCTCGACCTCGTCCTCGACGCCCTCGCCCTCTACAAGTACGTTGCCCCCAACCAGCGCGCCGATCTCATGCTCGCCTGCAGgtccgtccgccacacctttcctgccctcctctcttctgccactgcaattcaagatttcctcattttgctgagaaaataattgaaaaattccctcattttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaataa