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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTGGACTGTCGCATGTGTGGGGACCCAAATTCAGTCCTTAGGTTTGCTTTCATAGAGTTCACTGATGATGgtaatatatccatatccaaccatgtttcagtttgcttactatgtgtaatggatctacagtttatcgggtgaaaaacatcgatgtcccag

Basic information

species Zea mays
transcript GRMZM2G014573_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G014573_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 4
GTTGTGGACTGTCGCATGTGTGGGGACCCAAATTCAGTCCTTAGGTTTGCTTTCATAGAGTTCACTGATGATGgtaatatatccatatccaaccatgtttcagtttgcttactatgtgtaatggatctacagtttatcgggtgaaaaacatcgatgtcccag
|||||||||||||| ||||||||||| || ||||| || ||| | |||||||||||||||||||||||||| |||||  |       || |   ||  || ||  |   ||||        | |||| | |||  || || | | ||||  |  ||   |||
GTTGTGGACTGTCGTATGTGTGGGGATCCGAATTCTGTTCTTCGTTTTGCTTTCATAGAGTTCACTGATGAGGgtaa-gtg-----gtcgagtgataattaagcata--tact--------tagatcaatagtcaattggttaataaactgctctgctgcag

upper sequence: GRMZM2G014573_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT4G10610.2 (Arabidopsis thaliana), 5'ss of exon 4
GTTGTGGACTGTCGCATGTGTGGGGACCCAAATTCAGTCCTTAGGTTTGCTTTCATAGAGTTCACTGATGATGgtaatata----tccatatccaaccatgtttcagtttgcttactatgtgtaatggatctacagtttatcgggtgaaaaacatcgatgtcccag
||||| |||||||| || ||||| || || || ||||| ||||||||||||||||| |||||||||||||| ||||  ||     ||  |||  || |   ||   |  |  |  || |  ||  | | | ||  |||| ||   |    |               
GTTGTTGACTGTCGTATATGTGGTGATCCCAACTCAGTACTTAGGTTTGCTTTCATCGAGTTCACTGATGAAGgtatcattagtttctctatgtaatctgtttattggataatgcctgtaagtgcttggtttatggtttgtcattttgggacttgtag--------

upper sequence: GRMZM2G014573_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT1G32790.2 (Arabidopsis thaliana), 5'ss of exon 4
GTTGTGGACTGTCGCATGTGTGGGGACCCAAATTCAGTCCTTAGGTTTGCTTTCATAGAGTTCACTGATGATGgtaatatatccatatccaaccatgtttcagtttgcttactatg-tgtaatggatctacagtttatcgggtgaaaaacatcgatgtcccag
||||| ||||||||||| || || |||||||| || |||||| ||||||| |||||||||||||||||||| |||| ||| ||  | ||   |  |  |  ||| |  | | | |  |  | ||| |  |    || | |  |      ||            
GTTGTTGACTGTCGCATATGCGGTGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattatttcattttct--cggttctggagtatcatcagtgtactacagtggttaaatgtcttgtggttttgttttcag-----------