1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGGACTTGACGCTCGTATCCCGCGGTCCGCCGCTGCGGGAGAGGGTCGACGGCAAGgtgaggttcttggaccgtctggccaaatttgtgtcctgcggtcgcgatcccagatcccatattgattccgttttttgctgttggtttcttggttgtcctacag
species | Zea mays |
transcript | GRMZM2G003692_T05 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGACGCTCGTATCCCGCGGTCCGCCGCTGCGGGAGAGGGTCGACGGCAAG GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTGEST: gi|211174932|gb|FL421412.1|FL421412
genomic: TGACGCTCGTATCCCGCGGTCCGCCGCTGCGGGAGAGGGTCGACGGCAAGgtgaggttct ... tgtcctacagGTCGTGTGGATTACTGGAGCTAGCCGCGGGATTG
EST: TGACGCTCGTATCCCGCGGTCCGCCGCTGCKK-AGAGGGTCGACGGCAAG GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTGEST: gi|211455863|gb|FL399438.1|FL399438
genomic: TGACGCTCGTATCCCGCGGTCCGCCGCTGCGGGAGAGGGTCGACGGCAAGgtgaggttct ... tgtcctacagGTCGTGTGGATTACTGGAGCTAGCCGCGGGATTG
EST: TGACGCTCGTATCCCGCGGTCCGCCGCTGCGGGAGAGGGTCGACGGCAAG GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTG
genomic: TGACGCTCGTATCCCGCGGTCCGCCGCTGCGGGAGAGGGTCGACGGCAAGgtgaggttct ... tgtcctacagGTCGTGTGGATTACTGGAGCTAGCCGCGGGATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGACTTGACGCTCGTATCCCGCGGTCCGCCGCTGCGGGAGAGGGTCGACGGCAAGgtgaggttcttggaccgtctggccaaatttgtgtcctgcggtcgcgatcccagatcccatattgattccgttttttgctgttggtttcttggttgtcctacag
- - - - - - - - - - - - - - - - - - - GAGAGG