Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGGAGCTGACGGAAGGAAAGGGGAGGCTCAAGGCAATGTTCTTCTTGCATCAATTGAGAATATGCAATATGATGTTACTGTAGATGTTCTTCATACTgtaagtcaaattgtgaagacaatttaaaatatccttaattgtttttgttattttctcttctaactatgacaatgtggctacag

Basic information

species Zea mays
transcript AC198395.3_FGT002
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC198395.3_FGT002 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g25980.1 (Oryza sativa), 5'ss of exon 7
TGTTGGAGCTGACGGAAGGAAAGGGGAGGCTCAAGGCAATGTTCTTCTTGCATCAATTGAGAATATGCAATATGATGTTACTGTAGATGTTCTTCATACTgtaagtcaaattgtgaagacaatttaaaatatccttaattgtttttgttattttctcttctaactatgacaatgtggctacag
|||||| || || |||||||||| ||| ||| |||||||||||||||| ||||||||||| |||||||||||||  || || || |||||||| |||||||||||| |||||| |||  || ||    | |   ||  |||||||     |  | | | || |||| ||  |      | |||
TGTTGGTGCCGATGGAAGGAAAGTGGAAGCTGAAGGCAATGTTCTTCTCGCATCAATTGAAAATATGCAATATGCAGTCACGGTGGATGTTCTCCATACTgtaagttaaattg-gaaagcacttattcaaagattttgttgttttgtagttactatatgctgactaagattaatcaattccag

upper sequence: AC198395.3_FGT002 (Zea mays), 5'ss of exon 2
lower sequence: AT3G01150.2 (Arabidopsis thaliana), 5'ss of exon 5
TGTTGGAGCTGACGGAAGGAAAGGGGAGGCTCAAGGCAATGTTCTTCTTGCATCAATTGAGAATATGCAATATGATGTTACTGTAGATGTTCTTCATACTgtaagtca-aattgtgaagacaatttaaaatatccttaattgtttttgttattttctcttctaactatgacaatgtggctacag---
| | || |||||||| | |||||  ||  ||||  |||| || ||||| |  |  |||||||||||||| |||| ||| ||||| ||||||||||| || |||||  | ||  || | |   ||||    |     |||   || ||  |     ||||   || ||  |   | ||  |       
TTTAGGTGCTGACGGCAAGAAAGTTGAATCTCAGAGCAACGTCCTTCTCGGTTTGATTGAGAATATGCAGTATGCTGTCACTGTGGATGTTCTTCACACGgtaaggaacaacagtcatgcacattt---ctgcttctaagcattcttagt-----ctctcaaaaataacatcctttgcttctcatag

upper sequence: AC198395.3_FGT002 (Zea mays), 5'ss of exon 2
lower sequence: Vv14s0108g01030.t01 (Vitis vinifera), 5'ss of exon 7
TGTTGGAGCTGACGGAAGGAAAGGGGAGGCTCAAGGCAATGTTCTTCTTGCATCAATTGAGAATATGCAATATGATGTTACTGTAGATGTTCTTCATACTgtaagtcaaattgtgaa-gacaatttaaaatatccttaattgtttt-tgttattttctcttctaactatgacaatgtggctacag---
| | ||  |||| || | ||||   ||  || |  | |||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||| || || ||| |   | |  | ||     |  |||   |||  || |  | ||  || | ||| |      ||| |       |||      
TTTAGGTCCTGATGGCAAGAAAAAAGAACCTGAGAGTAATGTTCTTCTTGCTTCAATTGAGAATATGCAATATGCTGTTACAGTAGATGTTCTTCACACGgtgagtaattctatttatgatttcctccaatgatcttttttatcatgtgggatgtactcatactgtgatgtcggatcacctatttcag