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ACCTGGAGCTTGAGCTGGAGGAAACAAAAAAGAAGTGCGGTCAGCTTGCTGCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAGgttagtttggttacctctggcaagtggcaacatgttttccctatgtgctagggtttcagttttctgtcacctgtctagctctttgatcttgcaactgtct...
species | Zea mays |
transcript | GRMZM2G021864_T01 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAG GGCATCATTAAGACCGAGGACACGGAGGTACACGACAACGACCAATACTGAEST: gi|211215778|gb|FL437224.1|FL437224
genomic: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAGgttagtttgg ... attgctgcagGGCATCATTAAGACCGAGGACACGGAGGTACACGACAACGACCAATACTGA
EST: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAG GGCATCATTAAGACCGAGGACACGGAGGTACACGACAACGACCAATACTGAEST: gi|32909144|gb|CF013956.1|CF013956
genomic: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAGgttagtttgg ... attgctgcagGGCATCATTAAGACCGAGGACACGGAGGTACACGACAACGACCAATACTGA
EST: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAG GGCATCATTAAGACCGAGGACACGGAGGTACCCGACAACGACCAATACTGAEST: gi|89248917|gb|DY620703.1|DY620703
genomic: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAGgttagtttgg ... attgctgcagGGCATCATTAAGACCGAGGACACGGAGGTACACGACAACGACCAATACTGA
EST: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAG GGCATCATTAAGACCGAGGACACGGAGGTACACGACAACGACCAATACTGAEST: gi|5608024|gb|AI901691.1|AI901691
genomic: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAGgttagtttgg ... attgctgcagGGCATCATTAAGACCGAGGACACGGAGGTACACGACAACGACCAATACTGA
EST: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAG GGCATCATTAAGACCGAGGACACGGAGGTACACGACAACGACCAATACTGAEST: gi|6194461|gb|AW146565.1|AW146565
genomic: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAGgttagtttgg ... attgctgcagGGCATCATTAAGACCGAGGACACGGAGGTACACGACAACGACCAATACTGA
EST: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAG GGCACCATTAAGACCGAGGACACGGAGGTACACGACAACGACCAATACTGAEST: gi|32934210|gb|CF039022.1|CF039022
genomic: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAGgttagtttgg ... attgctgcagGGCATCATTAAGACCGAGGACACGGAGGTACACGACAACGACCAATACTGA
EST: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAG GGCATCATTAAGACCGAGGACACGGAGGTACEST: gi|78106767|gb|DV525185.1|DV525185
genomic: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAGgttagtttgg ... attgctgcagGGCATCATTAAGACCGAGGACACGGAGGTAC
EST: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAG GGCATCATTAAGACCGAGGACACGGAGGTACACGACAACGACCAATACTGAEST: gi|116827696|gb|EC871624.1|EC871624
genomic: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAGgttagtttgg ... attgctgcagGGCATCATTAAGACCGAGGACACGGAGGTACACGACAACGACCAATACTGA
EST: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAG GGCATCATTAAGACCGAGGACACGGAGGTACACGACAACGACCAATACTGAEST: gi|32930527|gb|CF035339.1|CF035339
genomic: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAGgttagtttgg ... attgctgcagGGCATCATTAAGACCGAGGACACGGAGGTACACGACAACGACCAATACTGA
EST: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAG GGCATCATTAAGACCGAGGACACGGAGGTACEST: gi|32932800|gb|CF037612.1|CF037612
genomic: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAGgttagtttgg ... attgctgcagGGCATCATTAAGACCGAGGACACGGAGGTAC
EST: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAG GGCATCATTAAGACCGAGGACACGGAGGTAEST: gi|5713643|gb|AI943635.1|AI943635
genomic: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAGgttagtttgg ... attgctgcagGGCATCATTAAGACCGAGGACACGGAGGTA
EST: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAG GGCATCATTAAGACCGAGGACACGGAGGTACACGACAACGACCAATACTGAEST: gi|113687140|gb|DW842602.1|DW842602
genomic: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAGgttagtttgg ... attgctgcagGGCATCATTAAGACCGAGGACACGGAGGTACACGACAACGACCAATACTGA
EST: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAG GGCATCATTAAGACCGAGGACACGGAGGTACACGACAACGEST: gi|32932808|gb|CF037620.1|CF037620
genomic: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAGgttagtttgg ... attgctgcagGGCATCATTAAGACCGAGGACACGGAGGTACACGACAACG
EST: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAG GGCATCATTAAGACCGAGGACACGGAGGTAEST: gi|91054831|gb|EB165249.1|EB165249
genomic: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAGgttagtttgg ... attgctgcagGGCATCATTAAGACCGAGGACACGGAGGTA
EST: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAG GGCATCATTAAGACCGAGGACACGGAGGTACACGACAACGACCAATACTGAEST: gi|13381810|gb|BG458485.1|BG458485
genomic: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAGgttagtttgg ... attgctgcagGGCATCATTAAGACCGAGGACACGGAGGTACACGACAACGACCAATACTGA
EST: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAG GGCATCATTAAGACCGAGGACACGGAGGTACACGACAACGACCAATACTGA
genomic: GCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAGgttagtttgg ... attgctgcagGGCATCATTAAGACCGAGGACACGGAGGTACACGACAACGACCAATACTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCTGGAGCTTGAGCTGGAGGAAACAAAAAAGAAGTGCGGTCAGCTTGCTGCTCAGCTCAAGGCATGGAAGAACCAGCAGCATCTACCCTAAATGTGAAGgttagtttggttacctctggcaagtggcaacatgttttccctatgtgctagggtttcagttttctgtcacctgtctagctctttgatcttgcaactgtct
- - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC