1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
AACATCTCTTGTTGCCCTGCAAGACCTGACGCTAGACAAGATCTTCGACGAGTCAGGAAGGAAAGCACTATTCTCAGACATCTCGAAACTAATGGAACAGgttagaggtcaaaacagccatccttgagagtgaacctgagatgcgctcaacagctaacatattccgtcttcgttgttttag
species | Zea mays |
transcript | GRMZM2G109987_T05 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: AGTCAGGAAGGAAAGCACTATTCTCAGACATCTCGAAACTAATGGAACAG GGCTACGCGTACCTGCCGTCAGGCGTGTGCATGTCAGGAATGGGCCGCCATEST: gi|166621677|gb|EG177308.1|EG177308
genomic: AGTCAGGAAGGAAAGCACTATTCTCAGACATCTCGAAACTAATGGAACAGgttagaggtc ... gttgttttagGGCTACGCGTACCTGCCGTCAGGCGTGTGCATGTCAGGAATGGGCCGCCAT
EST: ATCTCGAAACTAATGGAACAG GGCTACGCGTACCTGCCGTCAGGCGTGTGCATGTCAGGAATGGGCCGCCATEST: gi|14244886|gb|BG842824.2|BG842824
genomic: ATCTCGAAACTAATGGAACAGgttagaggtc ... gttgttttagGGCTACGCGTACCTGCCGTCAGGCGTGTGCATGTCAGGAATGGGCCGCCAT
EST: AGTCAGGAAGGAAAGCACTATTTTCAGACATCTCGAAACTAATGGAACAG GGCTACGCGTACCTGCCGTCAGGCGTGTGCATGTCAGGAATGGGCCGCCATEST: gi|30032082|gb|CB833933.1|CB833933
genomic: AGTCAGGAAGGAAAGCACTATTCTCAGACATCTCGAAACTAATGGAACAGgttagaggtc ... gttgttttagGGCTACGCGTACCTGCCGTCAGGCGTGTGCATGTCAGGAATGGGCCGCCAT
EST: AGTCAGGAAGGAAAGCACTATTCTCAGACATCTCGAAACTAATGGAACAG GGCTACGCGTACCTGCCGTCAGGCGTGTGCATGTCAGGAATGGAACACCATEST: gi|211351868|gb|FK984283.1|FK984283
genomic: AGTCAGGAAGGAAAGCACTATTCTCAGACATCTCGAAACTAATGGAACAGgttagaggtc ... gttgttttagGGCTACGCGTACCTGCCGTCAGGCGTGTGCATGTCAGGAATGGGCCGCCAT
EST: AGTCAGGAAGGAAAGCACTATTCTCAGACATCTCGAAACTAATGGAACAG GGCTACGCGTACCTGCCGTCASS--TGTGCATGTCAGGAATGGGCCGCCATEST: gi|101391393|gb|EB817631.1|EB817631
genomic: AGTCAGGAAGGAAAGCACTATTCTCAGACATCTCGAAACTAATGGAACAGgttagaggtc ... gttgttttagGGCTACGCGTACCTGCCGTCAGGCGTGTGCATGTCAGGAATGGGCCGCCAT
EST: AGTCAGGAAGGAAAGCACTATTTTCAGACATCTCGAAACTAATGGAACAG GGCTACGCGTACCTGCCGTCAGGCGTGTGCATGTCAGGAATGGGCCGCCATEST: gi|211351870|gb|FK984285.1|FK984285
genomic: AGTCAGGAAGGAAAGCACTATTCTCAGACATCTCGAAACTAATGGAACAGgttagaggtc ... gttgttttagGGCTACGCGTACCTGCCGTCAGGCGTGTGCATGTCAGGAATGGGCCGCCAT
EST: AGTCAGGAAGGAAAGCACTATTCTCAGACATCTCGAAACTAATGGAACAG GGCTACGCGTACCTGCCGTCAGGCGTGTGCATGTCAGGAATGGGCCGCCATEST: gi|31350140|gb|CD434497.1|CD434497
genomic: AGTCAGGAAGGAAAGCACTATTCTCAGACATCTCGAAACTAATGGAACAGgttagaggtc ... gttgttttagGGCTACGCGTACCTGCCGTCAGGCGTGTGCATGTCAGGAATGGGCCGCCAT
EST: AGTCAGGAAGGAAAGCACTATTCTCAGACATCTCGAAACTAATGGAACAG GGCTACGCGTACCTGCCGTCAGGCGTGTGCATGTCAGGAATGGGCCGCCATEST: gi|4681163|gb|AI629833.1|AI629833
genomic: AGTCAGGAAGGAAAGCACTATTCTCAGACATCTCGAAACTAATGGAACAGgttagaggtc ... gttgttttagGGCTACGCGTACCTGCCGTCAGGCGTGTGCATGTCAGGAATGGGCCGCCAT
EST: AGTCAGGAAGGAAAGCACTATTCTCAGACATCTCGAAACTAATGGAACAG GGCTACGCGTACCTGCCGTCAGGCGTGTGCATGTCAGGAATGGGCCGCCATEST: gi|32835598|gb|CD975276.1|CD975276
genomic: AGTCAGGAAGGAAAGCACTATTCTCAGACATCTCGAAACTAATGGAACAGgttagaggtc ... gttgttttagGGCTACGCGTACCTGCCGTCAGGCGTGTGCATGTCAGGAATGGGCCGCCAT
EST: AGTCAGGAAGGAAAGCACTATTCTCAGACATCTCGAAACTAATGGAACAG GGCTACGCGTACCTEST: gi|211247735|gb|FL065573.1|FL065573
genomic: AGTCAGGAAGGAAAGCACTATTCTCAGACATCTCGAAACTAATGGAACAGgttagaggtc ... gttgttttagGGCTACGCGTACCT
EST: AGTCAGGAAGGAAAGCACTATTCTCAGACATCTCGAAACTAATGGAACAG GGCTACGCGTACCTGCCGTCAGGCGTGTGCATGTCAGGAATGGGCCGCCAT
genomic: AGTCAGGAAGGAAAGCACTATTCTCAGACATCTCGAAACTAATGGAACAGgttagaggtc ... gttgttttagGGCTACGCGTACCTGCCGTCAGGCGTGTGCATGTCAGGAATGGGCCGCCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACATCTCTTGTTGCCCTGCAAGACCTGACGCTAGACAAGATCTTCGACGAGTCAGGAAGGAAAGCACTATTCTCAGACATCTCGAAACTAATGGAACAGgttagaggtcaaaacagccatccttgagagtgaacctgagatgcgctcaacagctaacatattccgtcttcgttgttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA